Experiment: phage_S63 51MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07925 and ABID97_RS07930 are separated by 93 nucleotides ABID97_RS07930 and ABID97_RS07935 are separated by 23 nucleotides
ABID97_RS07925: ABID97_RS07925 - SDR family NAD(P)-dependent oxidoreductase, at 1,664,549 to 1,665,454
_RS07925
ABID97_RS07930: ABID97_RS07930 - LysR family transcriptional regulator, at 1,665,548 to 1,666,438
_RS07930
ABID97_RS07935: ABID97_RS07935 - MmgE/PrpD family protein, at 1,666,462 to 1,667,823
_RS07935
Position (kb)
1665
1666
1667 Strain fitness (log2 ratio)
-1
0
1
2 at 1664.916 kb on - strand, within ABID97_RS07925 at 1664.924 kb on + strand, within ABID97_RS07925 at 1664.925 kb on - strand, within ABID97_RS07925 at 1664.927 kb on + strand, within ABID97_RS07925 at 1664.927 kb on + strand, within ABID97_RS07925 at 1664.927 kb on + strand, within ABID97_RS07925 at 1664.927 kb on + strand, within ABID97_RS07925 at 1664.927 kb on + strand, within ABID97_RS07925 at 1664.928 kb on - strand, within ABID97_RS07925 at 1664.928 kb on - strand, within ABID97_RS07925 at 1665.017 kb on + strand, within ABID97_RS07925 at 1665.017 kb on + strand, within ABID97_RS07925 at 1665.018 kb on - strand, within ABID97_RS07925 at 1665.032 kb on + strand, within ABID97_RS07925 at 1665.033 kb on - strand, within ABID97_RS07925 at 1665.236 kb on + strand, within ABID97_RS07925 at 1665.236 kb on + strand, within ABID97_RS07925 at 1665.237 kb on - strand, within ABID97_RS07925 at 1665.872 kb on + strand, within ABID97_RS07930 at 1665.873 kb on - strand, within ABID97_RS07930 at 1666.275 kb on + strand, within ABID97_RS07930 at 1667.162 kb on + strand, within ABID97_RS07935 at 1667.418 kb on - strand, within ABID97_RS07935
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 51MOI remove 1,664,916 - ABID97_RS07925 0.41 -1.3 1,664,924 + ABID97_RS07925 0.41 -1.4 1,664,925 - ABID97_RS07925 0.42 +0.2 1,664,927 + ABID97_RS07925 0.42 +0.3 1,664,927 + ABID97_RS07925 0.42 -0.5 1,664,927 + ABID97_RS07925 0.42 +0.3 1,664,927 + ABID97_RS07925 0.42 -1.0 1,664,927 + ABID97_RS07925 0.42 -0.2 1,664,928 - ABID97_RS07925 0.42 -0.1 1,664,928 - ABID97_RS07925 0.42 +0.3 1,665,017 + ABID97_RS07925 0.52 +0.1 1,665,017 + ABID97_RS07925 0.52 -0.6 1,665,018 - ABID97_RS07925 0.52 +0.6 1,665,032 + ABID97_RS07925 0.53 +0.3 1,665,033 - ABID97_RS07925 0.53 -0.7 1,665,236 + ABID97_RS07925 0.76 +0.0 1,665,236 + ABID97_RS07925 0.76 -0.2 1,665,237 - ABID97_RS07925 0.76 +0.4 1,665,872 + ABID97_RS07930 0.36 -0.5 1,665,873 - ABID97_RS07930 0.36 -1.1 1,666,275 + ABID97_RS07930 0.82 +0.3 1,667,162 + ABID97_RS07935 0.51 +2.0 1,667,418 - ABID97_RS07935 0.70 +0.1
Or see this region's nucleotide sequence