Strain Fitness in Pseudomonas sp. RS175 around PFR28_04700

Experiment: Choline chloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04699 and PFR28_04700 are separated by 62 nucleotidesPFR28_04700 and PFR28_04701 are separated by 72 nucleotidesPFR28_04701 and PFR28_04702 are separated by 99 nucleotides PFR28_04699: PFR28_04699 - Oligopeptidase A, at 5,358,584 to 5,360,662 _04699 PFR28_04700: PFR28_04700 - Protein YrdA, at 5,360,725 to 5,361,270 _04700 PFR28_04701: PFR28_04701 - 5'-nucleotidase, at 5,361,343 to 5,361,993 _04701 PFR28_04702: PFR28_04702 - hypothetical protein, at 5,362,093 to 5,362,704 _04702 Position (kb) 5360 5361 5362Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5359.912 kb on - strand, within PFR28_04699at 5359.912 kb on - strand, within PFR28_04699at 5359.920 kb on + strand, within PFR28_04699at 5359.953 kb on + strand, within PFR28_04699at 5359.969 kb on - strand, within PFR28_04699at 5359.971 kb on + strand, within PFR28_04699at 5359.972 kb on - strand, within PFR28_04699at 5359.972 kb on - strand, within PFR28_04699at 5359.972 kb on - strand, within PFR28_04699at 5359.972 kb on - strand, within PFR28_04699at 5359.972 kb on - strand, within PFR28_04699at 5359.972 kb on - strand, within PFR28_04699at 5359.972 kb on - strand, within PFR28_04699at 5359.972 kb on - strand, within PFR28_04699at 5359.972 kb on - strand, within PFR28_04699at 5360.083 kb on + strand, within PFR28_04699at 5360.084 kb on - strand, within PFR28_04699at 5360.084 kb on - strand, within PFR28_04699at 5360.162 kb on + strand, within PFR28_04699at 5360.162 kb on + strand, within PFR28_04699at 5360.162 kb on + strand, within PFR28_04699at 5360.162 kb on + strand, within PFR28_04699at 5360.163 kb on + strand, within PFR28_04699at 5360.163 kb on - strand, within PFR28_04699at 5360.163 kb on - strand, within PFR28_04699at 5360.163 kb on - strand, within PFR28_04699at 5360.163 kb on - strand, within PFR28_04699at 5360.163 kb on - strand, within PFR28_04699at 5360.163 kb on - strand, within PFR28_04699at 5360.163 kb on - strand, within PFR28_04699at 5360.298 kb on + strand, within PFR28_04699at 5360.340 kb on + strand, within PFR28_04699at 5360.341 kb on - strand, within PFR28_04699at 5360.370 kb on + strand, within PFR28_04699at 5360.370 kb on + strand, within PFR28_04699at 5360.370 kb on + strand, within PFR28_04699at 5360.370 kb on + strand, within PFR28_04699at 5360.370 kb on + strand, within PFR28_04699at 5360.371 kb on - strand, within PFR28_04699at 5360.371 kb on - strand, within PFR28_04699at 5360.605 kb on - strandat 5360.673 kb on + strandat 5360.673 kb on + strandat 5360.674 kb on - strandat 5360.674 kb on - strandat 5360.674 kb on - strandat 5360.674 kb on - strandat 5360.674 kb on - strandat 5360.677 kb on + strandat 5360.677 kb on + strandat 5360.677 kb on + strandat 5360.678 kb on - strandat 5360.678 kb on - strandat 5360.699 kb on + strandat 5360.699 kb on + strandat 5360.699 kb on + strandat 5360.700 kb on - strandat 5360.700 kb on - strandat 5360.705 kb on + strandat 5360.722 kb on - strandat 5360.740 kb on + strandat 5360.740 kb on + strandat 5360.741 kb on - strandat 5360.741 kb on - strandat 5360.741 kb on - strandat 5360.915 kb on + strand, within PFR28_04700at 5360.915 kb on + strand, within PFR28_04700at 5360.915 kb on + strand, within PFR28_04700at 5360.915 kb on + strand, within PFR28_04700at 5360.915 kb on + strand, within PFR28_04700at 5360.916 kb on - strand, within PFR28_04700at 5360.916 kb on - strand, within PFR28_04700at 5360.916 kb on - strand, within PFR28_04700at 5360.978 kb on + strand, within PFR28_04700at 5360.978 kb on + strand, within PFR28_04700at 5360.978 kb on + strand, within PFR28_04700at 5360.978 kb on + strand, within PFR28_04700at 5360.978 kb on + strand, within PFR28_04700at 5360.978 kb on + strand, within PFR28_04700at 5360.979 kb on - strand, within PFR28_04700at 5360.979 kb on - strand, within PFR28_04700at 5360.979 kb on - strand, within PFR28_04700at 5360.979 kb on - strand, within PFR28_04700at 5360.979 kb on - strand, within PFR28_04700at 5360.979 kb on - strand, within PFR28_04700at 5360.979 kb on - strand, within PFR28_04700at 5360.979 kb on - strand, within PFR28_04700at 5360.979 kb on - strand, within PFR28_04700at 5360.979 kb on - strand, within PFR28_04700at 5360.979 kb on - strand, within PFR28_04700at 5361.108 kb on - strand, within PFR28_04700at 5361.142 kb on + strand, within PFR28_04700at 5361.142 kb on + strand, within PFR28_04700at 5361.143 kb on - strand, within PFR28_04700at 5361.143 kb on - strand, within PFR28_04700at 5361.143 kb on - strand, within PFR28_04700at 5361.205 kb on + strand, within PFR28_04700at 5361.206 kb on - strand, within PFR28_04700at 5361.206 kb on - strand, within PFR28_04700at 5361.206 kb on - strand, within PFR28_04700at 5361.206 kb on - strand, within PFR28_04700at 5361.206 kb on - strand, within PFR28_04700at 5361.206 kb on - strand, within PFR28_04700at 5361.220 kb on + strandat 5361.220 kb on + strandat 5361.220 kb on + strandat 5361.220 kb on + strandat 5361.220 kb on + strandat 5361.220 kb on + strandat 5361.220 kb on + strandat 5361.221 kb on - strandat 5361.221 kb on - strandat 5361.221 kb on - strandat 5361.221 kb on - strandat 5361.221 kb on - strandat 5361.221 kb on - strandat 5361.221 kb on - strandat 5361.224 kb on + strandat 5361.224 kb on + strandat 5361.224 kb on + strandat 5361.224 kb on + strandat 5361.224 kb on + strandat 5361.224 kb on + strandat 5361.225 kb on - strandat 5361.225 kb on - strandat 5361.256 kb on + strandat 5361.257 kb on - strandat 5361.349 kb on + strandat 5361.359 kb on + strandat 5361.360 kb on - strandat 5361.514 kb on + strand, within PFR28_04701at 5361.514 kb on + strand, within PFR28_04701at 5361.514 kb on + strand, within PFR28_04701at 5361.514 kb on + strand, within PFR28_04701at 5361.514 kb on + strand, within PFR28_04701at 5361.514 kb on + strand, within PFR28_04701at 5361.514 kb on + strand, within PFR28_04701at 5361.514 kb on + strand, within PFR28_04701at 5361.515 kb on - strand, within PFR28_04701at 5361.515 kb on - strand, within PFR28_04701at 5361.515 kb on - strand, within PFR28_04701at 5361.515 kb on - strand, within PFR28_04701at 5361.515 kb on - strand, within PFR28_04701at 5361.515 kb on - strand, within PFR28_04701at 5361.515 kb on - strand, within PFR28_04701at 5361.515 kb on - strand, within PFR28_04701at 5361.515 kb on - strand, within PFR28_04701at 5361.556 kb on + strand, within PFR28_04701at 5361.556 kb on + strand, within PFR28_04701at 5361.556 kb on + strand, within PFR28_04701at 5361.557 kb on - strand, within PFR28_04701at 5361.587 kb on - strand, within PFR28_04701at 5361.621 kb on - strand, within PFR28_04701at 5361.655 kb on + strand, within PFR28_04701at 5361.655 kb on + strand, within PFR28_04701at 5361.655 kb on + strand, within PFR28_04701at 5361.655 kb on + strand, within PFR28_04701at 5361.655 kb on + strand, within PFR28_04701at 5361.656 kb on - strand, within PFR28_04701at 5361.656 kb on - strand, within PFR28_04701at 5361.656 kb on - strand, within PFR28_04701at 5361.656 kb on - strand, within PFR28_04701at 5361.656 kb on - strand, within PFR28_04701at 5361.656 kb on - strand, within PFR28_04701at 5361.656 kb on - strand, within PFR28_04701at 5361.663 kb on + strand, within PFR28_04701at 5361.736 kb on + strand, within PFR28_04701at 5361.736 kb on + strand, within PFR28_04701at 5361.736 kb on + strand, within PFR28_04701at 5361.736 kb on + strand, within PFR28_04701at 5361.737 kb on - strand, within PFR28_04701at 5361.737 kb on - strand, within PFR28_04701at 5361.737 kb on - strand, within PFR28_04701at 5361.737 kb on - strand, within PFR28_04701at 5361.768 kb on + strand, within PFR28_04701at 5361.768 kb on + strand, within PFR28_04701at 5361.768 kb on + strand, within PFR28_04701at 5361.768 kb on + strand, within PFR28_04701at 5361.769 kb on - strand, within PFR28_04701at 5361.769 kb on - strand, within PFR28_04701at 5361.769 kb on - strand, within PFR28_04701at 5361.822 kb on + strand, within PFR28_04701at 5362.136 kb on + strandat 5362.136 kb on + strandat 5362.137 kb on - strandat 5362.137 kb on - strandat 5362.137 kb on - strandat 5362.184 kb on + strand, within PFR28_04702at 5362.184 kb on + strand, within PFR28_04702at 5362.185 kb on - strand, within PFR28_04702at 5362.185 kb on - strand, within PFR28_04702at 5362.233 kb on + strand, within PFR28_04702at 5362.244 kb on + strand, within PFR28_04702at 5362.244 kb on + strand, within PFR28_04702at 5362.244 kb on + strand, within PFR28_04702at 5362.245 kb on - strand, within PFR28_04702at 5362.245 kb on - strand, within PFR28_04702at 5362.251 kb on + strand, within PFR28_04702at 5362.251 kb on + strand, within PFR28_04702at 5362.267 kb on + strand, within PFR28_04702at 5362.267 kb on + strand, within PFR28_04702at 5362.268 kb on - strand, within PFR28_04702

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride (C)
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5,359,912 - PFR28_04699 0.64 -0.4
5,359,912 - PFR28_04699 0.64 -2.1
5,359,920 + PFR28_04699 0.64 +0.4
5,359,953 + PFR28_04699 0.66 +1.7
5,359,969 - PFR28_04699 0.67 -1.8
5,359,971 + PFR28_04699 0.67 -1.3
5,359,972 - PFR28_04699 0.67 -0.8
5,359,972 - PFR28_04699 0.67 +0.3
5,359,972 - PFR28_04699 0.67 +1.2
5,359,972 - PFR28_04699 0.67 -0.0
5,359,972 - PFR28_04699 0.67 -2.4
5,359,972 - PFR28_04699 0.67 +0.9
5,359,972 - PFR28_04699 0.67 -3.2
5,359,972 - PFR28_04699 0.67 -1.8
5,359,972 - PFR28_04699 0.67 +0.2
5,360,083 + PFR28_04699 0.72 +0.7
5,360,084 - PFR28_04699 0.72 -1.5
5,360,084 - PFR28_04699 0.72 -0.0
5,360,162 + PFR28_04699 0.76 +2.3
5,360,162 + PFR28_04699 0.76 +1.1
5,360,162 + PFR28_04699 0.76 +0.7
5,360,162 + PFR28_04699 0.76 -1.1
5,360,163 + PFR28_04699 0.76 -0.1
5,360,163 - PFR28_04699 0.76 -1.3
5,360,163 - PFR28_04699 0.76 -1.0
5,360,163 - PFR28_04699 0.76 -0.4
5,360,163 - PFR28_04699 0.76 -2.1
5,360,163 - PFR28_04699 0.76 -1.3
5,360,163 - PFR28_04699 0.76 +1.0
5,360,163 - PFR28_04699 0.76 -0.3
5,360,298 + PFR28_04699 0.82 -0.9
5,360,340 + PFR28_04699 0.84 +2.3
5,360,341 - PFR28_04699 0.85 -0.0
5,360,370 + PFR28_04699 0.86 +1.3
5,360,370 + PFR28_04699 0.86 -1.9
5,360,370 + PFR28_04699 0.86 +0.1
5,360,370 + PFR28_04699 0.86 -1.3
5,360,370 + PFR28_04699 0.86 -0.3
5,360,371 - PFR28_04699 0.86 -0.6
5,360,371 - PFR28_04699 0.86 -2.5
5,360,605 - +0.1
5,360,673 + +1.7
5,360,673 + +0.7
5,360,674 - -2.4
5,360,674 - +0.4
5,360,674 - -0.9
5,360,674 - +0.2
5,360,674 - +0.6
5,360,677 + +0.8
5,360,677 + -2.5
5,360,677 + +0.5
5,360,678 - -0.8
5,360,678 - -1.7
5,360,699 + +0.9
5,360,699 + -0.8
5,360,699 + -0.2
5,360,700 - +2.7
5,360,700 - +0.5
5,360,705 + -0.5
5,360,722 - -1.1
5,360,740 + +1.0
5,360,740 + +1.5
5,360,741 - +0.8
5,360,741 - +0.1
5,360,741 - -1.0
5,360,915 + PFR28_04700 0.35 -1.8
5,360,915 + PFR28_04700 0.35 +0.6
5,360,915 + PFR28_04700 0.35 -2.3
5,360,915 + PFR28_04700 0.35 +2.7
5,360,915 + PFR28_04700 0.35 +1.7
5,360,916 - PFR28_04700 0.35 +1.1
5,360,916 - PFR28_04700 0.35 -0.3
5,360,916 - PFR28_04700 0.35 +0.3
5,360,978 + PFR28_04700 0.46 +0.7
5,360,978 + PFR28_04700 0.46 +1.0
5,360,978 + PFR28_04700 0.46 +0.1
5,360,978 + PFR28_04700 0.46 +1.0
5,360,978 + PFR28_04700 0.46 +0.7
5,360,978 + PFR28_04700 0.46 +0.8
5,360,979 - PFR28_04700 0.47 -0.4
5,360,979 - PFR28_04700 0.47 +1.2
5,360,979 - PFR28_04700 0.47 -1.7
5,360,979 - PFR28_04700 0.47 +0.7
5,360,979 - PFR28_04700 0.47 +4.0
5,360,979 - PFR28_04700 0.47 -3.0
5,360,979 - PFR28_04700 0.47 +0.5
5,360,979 - PFR28_04700 0.47 +0.5
5,360,979 - PFR28_04700 0.47 -2.2
5,360,979 - PFR28_04700 0.47 +0.1
5,360,979 - PFR28_04700 0.47 +0.7
5,361,108 - PFR28_04700 0.70 +1.0
5,361,142 + PFR28_04700 0.76 -1.0
5,361,142 + PFR28_04700 0.76 +1.1
5,361,143 - PFR28_04700 0.77 -1.1
5,361,143 - PFR28_04700 0.77 -2.1
5,361,143 - PFR28_04700 0.77 -0.0
5,361,205 + PFR28_04700 0.88 +0.5
5,361,206 - PFR28_04700 0.88 +0.8
5,361,206 - PFR28_04700 0.88 -1.9
5,361,206 - PFR28_04700 0.88 +0.3
5,361,206 - PFR28_04700 0.88 -2.3
5,361,206 - PFR28_04700 0.88 +1.5
5,361,206 - PFR28_04700 0.88 -2.2
5,361,220 + -0.0
5,361,220 + +0.3
5,361,220 + -0.1
5,361,220 + +0.3
5,361,220 + -0.1
5,361,220 + +1.0
5,361,220 + -0.3
5,361,221 - -0.6
5,361,221 - +0.1
5,361,221 - +0.7
5,361,221 - -0.5
5,361,221 - +0.5
5,361,221 - -0.1
5,361,221 - -2.2
5,361,224 + -0.6
5,361,224 + +0.7
5,361,224 + -1.1
5,361,224 + -0.3
5,361,224 + -0.1
5,361,224 + +0.4
5,361,225 - +1.2
5,361,225 - +0.7
5,361,256 + +0.1
5,361,257 - +0.2
5,361,349 + +0.2
5,361,359 + +0.2
5,361,360 - -1.7
5,361,514 + PFR28_04701 0.26 +0.5
5,361,514 + PFR28_04701 0.26 -0.1
5,361,514 + PFR28_04701 0.26 -0.5
5,361,514 + PFR28_04701 0.26 +0.0
5,361,514 + PFR28_04701 0.26 -1.1
5,361,514 + PFR28_04701 0.26 -1.9
5,361,514 + PFR28_04701 0.26 -0.2
5,361,514 + PFR28_04701 0.26 +0.1
5,361,515 - PFR28_04701 0.26 +1.3
5,361,515 - PFR28_04701 0.26 +0.5
5,361,515 - PFR28_04701 0.26 +0.8
5,361,515 - PFR28_04701 0.26 -1.8
5,361,515 - PFR28_04701 0.26 -0.7
5,361,515 - PFR28_04701 0.26 -1.8
5,361,515 - PFR28_04701 0.26 -0.5
5,361,515 - PFR28_04701 0.26 +0.5
5,361,515 - PFR28_04701 0.26 -1.7
5,361,556 + PFR28_04701 0.33 +0.6
5,361,556 + PFR28_04701 0.33 +0.4
5,361,556 + PFR28_04701 0.33 -0.4
5,361,557 - PFR28_04701 0.33 -3.0
5,361,587 - PFR28_04701 0.37 -0.1
5,361,621 - PFR28_04701 0.43 +1.0
5,361,655 + PFR28_04701 0.48 -1.0
5,361,655 + PFR28_04701 0.48 -0.1
5,361,655 + PFR28_04701 0.48 -0.4
5,361,655 + PFR28_04701 0.48 -0.1
5,361,655 + PFR28_04701 0.48 +0.2
5,361,656 - PFR28_04701 0.48 +0.7
5,361,656 - PFR28_04701 0.48 -1.7
5,361,656 - PFR28_04701 0.48 +0.2
5,361,656 - PFR28_04701 0.48 +0.5
5,361,656 - PFR28_04701 0.48 +0.2
5,361,656 - PFR28_04701 0.48 -0.7
5,361,656 - PFR28_04701 0.48 -0.5
5,361,663 + PFR28_04701 0.49 -0.1
5,361,736 + PFR28_04701 0.60 -0.3
5,361,736 + PFR28_04701 0.60 -1.2
5,361,736 + PFR28_04701 0.60 +0.4
5,361,736 + PFR28_04701 0.60 -1.0
5,361,737 - PFR28_04701 0.61 -1.1
5,361,737 - PFR28_04701 0.61 +0.6
5,361,737 - PFR28_04701 0.61 -2.0
5,361,737 - PFR28_04701 0.61 +1.4
5,361,768 + PFR28_04701 0.65 -0.2
5,361,768 + PFR28_04701 0.65 +0.6
5,361,768 + PFR28_04701 0.65 -0.3
5,361,768 + PFR28_04701 0.65 +1.5
5,361,769 - PFR28_04701 0.65 +1.2
5,361,769 - PFR28_04701 0.65 -0.1
5,361,769 - PFR28_04701 0.65 +0.4
5,361,822 + PFR28_04701 0.74 -0.8
5,362,136 + +1.0
5,362,136 + -1.3
5,362,137 - -0.6
5,362,137 - -1.6
5,362,137 - -1.7
5,362,184 + PFR28_04702 0.15 +0.0
5,362,184 + PFR28_04702 0.15 -0.1
5,362,185 - PFR28_04702 0.15 -4.0
5,362,185 - PFR28_04702 0.15 -1.1
5,362,233 + PFR28_04702 0.23 -0.7
5,362,244 + PFR28_04702 0.25 +1.7
5,362,244 + PFR28_04702 0.25 -0.4
5,362,244 + PFR28_04702 0.25 +0.9
5,362,245 - PFR28_04702 0.25 +0.8
5,362,245 - PFR28_04702 0.25 -1.4
5,362,251 + PFR28_04702 0.26 +0.2
5,362,251 + PFR28_04702 0.26 +0.2
5,362,267 + PFR28_04702 0.28 -1.1
5,362,267 + PFR28_04702 0.28 +0.1
5,362,268 - PFR28_04702 0.29 -1.4

Or see this region's nucleotide sequence