Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20950 and ABIE41_RS20955 are separated by 109 nucleotides ABIE41_RS20955 and ABIE41_RS20960 are separated by 13 nucleotides ABIE41_RS20960 and ABIE41_RS20965 are separated by 6 nucleotides
ABIE41_RS20950: ABIE41_RS20950 - tripartite tricarboxylate transporter substrate binding protein, at 4,311,000 to 4,311,962
_RS20950
ABIE41_RS20955: ABIE41_RS20955 - tripartite tricarboxylate transporter TctB family protein, at 4,312,072 to 4,312,551
_RS20955
ABIE41_RS20960: ABIE41_RS20960 - tripartite tricarboxylate transporter permease, at 4,312,565 to 4,314,064
_RS20960
ABIE41_RS20965: ABIE41_RS20965 - aldehyde reductase, at 4,314,071 to 4,315,117
_RS20965
Position (kb) 4312
4313
4314
4315 Strain fitness (log2 ratio) -1
0
1 at 4311.960 kb on + strand at 4311.960 kb on + strand at 4311.961 kb on - strand at 4312.156 kb on + strand, within ABIE41_RS20955 at 4312.156 kb on + strand, within ABIE41_RS20955 at 4312.157 kb on - strand, within ABIE41_RS20955 at 4312.157 kb on - strand, within ABIE41_RS20955 at 4312.159 kb on + strand, within ABIE41_RS20955 at 4312.160 kb on - strand, within ABIE41_RS20955 at 4312.192 kb on + strand, within ABIE41_RS20955 at 4312.192 kb on + strand, within ABIE41_RS20955 at 4312.766 kb on + strand, within ABIE41_RS20960 at 4312.766 kb on + strand, within ABIE41_RS20960 at 4312.766 kb on + strand, within ABIE41_RS20960 at 4312.767 kb on - strand, within ABIE41_RS20960 at 4312.767 kb on - strand, within ABIE41_RS20960 at 4312.767 kb on - strand, within ABIE41_RS20960 at 4312.767 kb on - strand, within ABIE41_RS20960 at 4312.767 kb on - strand, within ABIE41_RS20960 at 4312.767 kb on - strand, within ABIE41_RS20960 at 4312.769 kb on + strand, within ABIE41_RS20960 at 4312.781 kb on + strand, within ABIE41_RS20960 at 4312.781 kb on + strand, within ABIE41_RS20960 at 4312.781 kb on + strand, within ABIE41_RS20960 at 4312.781 kb on + strand, within ABIE41_RS20960 at 4312.781 kb on + strand, within ABIE41_RS20960 at 4312.781 kb on + strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4313.101 kb on - strand, within ABIE41_RS20960 at 4313.101 kb on - strand, within ABIE41_RS20960 at 4313.101 kb on - strand, within ABIE41_RS20960 at 4313.402 kb on + strand, within ABIE41_RS20960 at 4313.402 kb on + strand, within ABIE41_RS20960 at 4313.403 kb on - strand, within ABIE41_RS20960 at 4313.582 kb on + strand, within ABIE41_RS20960 at 4313.742 kb on - strand, within ABIE41_RS20960 at 4313.742 kb on - strand, within ABIE41_RS20960 at 4313.837 kb on + strand, within ABIE41_RS20960 at 4313.852 kb on + strand, within ABIE41_RS20960 at 4313.853 kb on - strand, within ABIE41_RS20960 at 4314.643 kb on - strand, within ABIE41_RS20965 at 4314.860 kb on + strand, within ABIE41_RS20965 at 4314.860 kb on + strand, within ABIE41_RS20965 at 4314.860 kb on + strand, within ABIE41_RS20965 at 4314.860 kb on + strand, within ABIE41_RS20965 at 4314.861 kb on - strand, within ABIE41_RS20965 at 4314.861 kb on - strand, within ABIE41_RS20965 at 4314.862 kb on + strand, within ABIE41_RS20965 at 4314.863 kb on - strand, within ABIE41_RS20965 at 4314.863 kb on - strand, within ABIE41_RS20965
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM remove 4,311,960 + +0.1 4,311,960 + +0.2 4,311,961 - +0.0 4,312,156 + ABIE41_RS20955 0.17 +0.9 4,312,156 + ABIE41_RS20955 0.17 -0.0 4,312,157 - ABIE41_RS20955 0.18 -0.1 4,312,157 - ABIE41_RS20955 0.18 -1.3 4,312,159 + ABIE41_RS20955 0.18 +0.2 4,312,160 - ABIE41_RS20955 0.18 +0.1 4,312,192 + ABIE41_RS20955 0.25 -0.2 4,312,192 + ABIE41_RS20955 0.25 -0.9 4,312,766 + ABIE41_RS20960 0.13 -0.5 4,312,766 + ABIE41_RS20960 0.13 +0.2 4,312,766 + ABIE41_RS20960 0.13 -0.0 4,312,767 - ABIE41_RS20960 0.13 -0.2 4,312,767 - ABIE41_RS20960 0.13 -1.7 4,312,767 - ABIE41_RS20960 0.13 -0.1 4,312,767 - ABIE41_RS20960 0.13 +0.2 4,312,767 - ABIE41_RS20960 0.13 -0.4 4,312,767 - ABIE41_RS20960 0.13 +0.4 4,312,769 + ABIE41_RS20960 0.14 +0.1 4,312,781 + ABIE41_RS20960 0.14 +0.4 4,312,781 + ABIE41_RS20960 0.14 -1.3 4,312,781 + ABIE41_RS20960 0.14 -0.4 4,312,781 + ABIE41_RS20960 0.14 -0.6 4,312,781 + ABIE41_RS20960 0.14 -1.2 4,312,781 + ABIE41_RS20960 0.14 -0.5 4,312,782 - ABIE41_RS20960 0.14 -1.2 4,312,782 - ABIE41_RS20960 0.14 -0.6 4,312,782 - ABIE41_RS20960 0.14 +1.3 4,312,782 - ABIE41_RS20960 0.14 -0.8 4,312,782 - ABIE41_RS20960 0.14 +0.2 4,312,782 - ABIE41_RS20960 0.14 +0.5 4,312,782 - ABIE41_RS20960 0.14 -0.5 4,312,782 - ABIE41_RS20960 0.14 +0.2 4,313,101 - ABIE41_RS20960 0.36 -0.1 4,313,101 - ABIE41_RS20960 0.36 +0.5 4,313,101 - ABIE41_RS20960 0.36 +1.3 4,313,402 + ABIE41_RS20960 0.56 -1.5 4,313,402 + ABIE41_RS20960 0.56 +0.3 4,313,403 - ABIE41_RS20960 0.56 -1.6 4,313,582 + ABIE41_RS20960 0.68 -0.1 4,313,742 - ABIE41_RS20960 0.78 +0.5 4,313,742 - ABIE41_RS20960 0.78 -0.3 4,313,837 + ABIE41_RS20960 0.85 -0.3 4,313,852 + ABIE41_RS20960 0.86 +0.5 4,313,853 - ABIE41_RS20960 0.86 -0.6 4,314,643 - ABIE41_RS20965 0.55 -0.5 4,314,860 + ABIE41_RS20965 0.75 -0.1 4,314,860 + ABIE41_RS20965 0.75 +0.2 4,314,860 + ABIE41_RS20965 0.75 +0.0 4,314,860 + ABIE41_RS20965 0.75 +0.1 4,314,861 - ABIE41_RS20965 0.75 -0.0 4,314,861 - ABIE41_RS20965 0.75 -0.3 4,314,862 + ABIE41_RS20965 0.76 +0.6 4,314,863 - ABIE41_RS20965 0.76 -0.1 4,314,863 - ABIE41_RS20965 0.76 -0.1
Or see this region's nucleotide sequence