Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17295 and ABIE41_RS17300 are separated by 48 nucleotides ABIE41_RS17300 and ABIE41_RS17305 are separated by 167 nucleotides ABIE41_RS17305 and ABIE41_RS17310 are separated by 70 nucleotides
ABIE41_RS17295: ABIE41_RS17295 - benzoate-CoA ligase family protein, at 3,563,640 to 3,565,271
_RS17295
ABIE41_RS17300: ABIE41_RS17300 - RidA family protein, at 3,565,320 to 3,565,724
_RS17300
ABIE41_RS17305: ABIE41_RS17305 - EF-hand domain-containing protein, at 3,565,892 to 3,566,527
_RS17305
ABIE41_RS17310: ABIE41_RS17310 - SDR family oxidoreductase, at 3,566,598 to 3,567,383
_RS17310
Position (kb) 3565
3566 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3564.322 kb on - strand, within ABIE41_RS17295 at 3564.322 kb on - strand, within ABIE41_RS17295 at 3564.528 kb on + strand, within ABIE41_RS17295 at 3564.751 kb on - strand, within ABIE41_RS17295 at 3564.903 kb on + strand, within ABIE41_RS17295 at 3564.903 kb on + strand, within ABIE41_RS17295 at 3564.903 kb on + strand, within ABIE41_RS17295 at 3564.903 kb on + strand, within ABIE41_RS17295 at 3564.903 kb on + strand, within ABIE41_RS17295 at 3564.903 kb on + strand, within ABIE41_RS17295 at 3564.903 kb on + strand, within ABIE41_RS17295 at 3564.903 kb on + strand, within ABIE41_RS17295 at 3564.903 kb on + strand, within ABIE41_RS17295 at 3564.903 kb on + strand, within ABIE41_RS17295 at 3564.903 kb on + strand, within ABIE41_RS17295 at 3564.903 kb on + strand, within ABIE41_RS17295 at 3564.904 kb on - strand, within ABIE41_RS17295 at 3564.904 kb on - strand, within ABIE41_RS17295 at 3564.904 kb on - strand, within ABIE41_RS17295 at 3564.904 kb on - strand, within ABIE41_RS17295 at 3564.904 kb on - strand, within ABIE41_RS17295 at 3564.904 kb on - strand, within ABIE41_RS17295 at 3564.904 kb on - strand, within ABIE41_RS17295 at 3564.904 kb on - strand, within ABIE41_RS17295 at 3564.904 kb on - strand, within ABIE41_RS17295 at 3564.904 kb on - strand, within ABIE41_RS17295 at 3564.904 kb on - strand, within ABIE41_RS17295 at 3564.905 kb on + strand, within ABIE41_RS17295 at 3564.933 kb on + strand, within ABIE41_RS17295 at 3564.939 kb on - strand, within ABIE41_RS17295 at 3564.972 kb on + strand, within ABIE41_RS17295 at 3565.083 kb on + strand, within ABIE41_RS17295 at 3565.083 kb on + strand, within ABIE41_RS17295 at 3565.083 kb on + strand, within ABIE41_RS17295 at 3565.083 kb on + strand, within ABIE41_RS17295 at 3565.084 kb on - strand, within ABIE41_RS17295 at 3565.084 kb on - strand, within ABIE41_RS17295 at 3565.084 kb on - strand, within ABIE41_RS17295 at 3565.084 kb on - strand, within ABIE41_RS17295 at 3565.174 kb on - strand at 3566.462 kb on + strand, within ABIE41_RS17305 at 3566.474 kb on + strand at 3566.474 kb on + strand at 3566.475 kb on - strand at 3566.475 kb on - strand at 3566.475 kb on - strand at 3566.475 kb on - strand at 3566.510 kb on + strand at 3566.651 kb on - strand at 3566.651 kb on - strand at 3566.651 kb on - strand at 3566.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM remove 3,564,322 - ABIE41_RS17295 0.42 +1.0 3,564,322 - ABIE41_RS17295 0.42 -0.6 3,564,528 + ABIE41_RS17295 0.54 +0.6 3,564,751 - ABIE41_RS17295 0.68 +1.3 3,564,903 + ABIE41_RS17295 0.77 +0.3 3,564,903 + ABIE41_RS17295 0.77 +0.2 3,564,903 + ABIE41_RS17295 0.77 -0.3 3,564,903 + ABIE41_RS17295 0.77 -0.6 3,564,903 + ABIE41_RS17295 0.77 -0.3 3,564,903 + ABIE41_RS17295 0.77 -0.6 3,564,903 + ABIE41_RS17295 0.77 -0.4 3,564,903 + ABIE41_RS17295 0.77 +0.2 3,564,903 + ABIE41_RS17295 0.77 +0.1 3,564,903 + ABIE41_RS17295 0.77 +0.4 3,564,903 + ABIE41_RS17295 0.77 -0.3 3,564,903 + ABIE41_RS17295 0.77 -0.0 3,564,904 - ABIE41_RS17295 0.77 +0.2 3,564,904 - ABIE41_RS17295 0.77 +0.1 3,564,904 - ABIE41_RS17295 0.77 +0.2 3,564,904 - ABIE41_RS17295 0.77 -1.2 3,564,904 - ABIE41_RS17295 0.77 -0.4 3,564,904 - ABIE41_RS17295 0.77 -0.8 3,564,904 - ABIE41_RS17295 0.77 +0.3 3,564,904 - ABIE41_RS17295 0.77 -0.1 3,564,904 - ABIE41_RS17295 0.77 -0.8 3,564,904 - ABIE41_RS17295 0.77 -0.7 3,564,904 - ABIE41_RS17295 0.77 -0.7 3,564,905 + ABIE41_RS17295 0.78 -0.1 3,564,933 + ABIE41_RS17295 0.79 +0.9 3,564,939 - ABIE41_RS17295 0.80 -0.5 3,564,972 + ABIE41_RS17295 0.82 -0.4 3,565,083 + ABIE41_RS17295 0.88 -1.8 3,565,083 + ABIE41_RS17295 0.88 +0.1 3,565,083 + ABIE41_RS17295 0.88 +0.2 3,565,083 + ABIE41_RS17295 0.88 +1.5 3,565,084 - ABIE41_RS17295 0.88 -1.2 3,565,084 - ABIE41_RS17295 0.88 -0.1 3,565,084 - ABIE41_RS17295 0.88 +0.3 3,565,084 - ABIE41_RS17295 0.88 -0.6 3,565,174 - -1.5 3,566,462 + ABIE41_RS17305 0.90 +3.9 3,566,474 + -0.5 3,566,474 + -0.1 3,566,475 - -0.9 3,566,475 - -0.2 3,566,475 - +1.6 3,566,475 - -0.5 3,566,510 + +0.3 3,566,651 - -1.0 3,566,651 - +0.1 3,566,651 - -0.4 3,566,651 - -0.1
Or see this region's nucleotide sequence