Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS15750 and ABIE41_RS15755 are separated by 320 nucleotides ABIE41_RS15755 and ABIE41_RS15760 are separated by 169 nucleotides ABIE41_RS15760 and ABIE41_RS15765 are separated by 13 nucleotides
ABIE41_RS15750: ABIE41_RS15750 - CTP synthase, at 3,225,516 to 3,227,144
_RS15750
ABIE41_RS15755: ABIE41_RS15755 - N-acetyl-gamma-glutamyl-phosphate reductase, at 3,227,465 to 3,228,436
_RS15755
ABIE41_RS15760: ABIE41_RS15760 - DUF350 domain-containing protein, at 3,228,606 to 3,229,007
_RS15760
ABIE41_RS15765: ABIE41_RS15765 - DUF1190 domain-containing protein, at 3,229,021 to 3,229,644
_RS15765
Position (kb)
3227
3228
3229 Strain fitness (log2 ratio)
-1
0
1
2 at 3227.365 kb on + strand at 3227.775 kb on - strand, within ABIE41_RS15755 at 3227.775 kb on - strand, within ABIE41_RS15755 at 3227.775 kb on - strand, within ABIE41_RS15755 at 3227.775 kb on - strand, within ABIE41_RS15755 at 3227.792 kb on + strand, within ABIE41_RS15755 at 3227.793 kb on - strand, within ABIE41_RS15755 at 3228.040 kb on + strand, within ABIE41_RS15755 at 3228.040 kb on + strand, within ABIE41_RS15755 at 3228.040 kb on + strand, within ABIE41_RS15755 at 3228.041 kb on - strand, within ABIE41_RS15755 at 3228.041 kb on - strand, within ABIE41_RS15755 at 3228.130 kb on + strand, within ABIE41_RS15755 at 3228.146 kb on + strand, within ABIE41_RS15755 at 3228.147 kb on - strand, within ABIE41_RS15755 at 3228.200 kb on + strand, within ABIE41_RS15755 at 3228.284 kb on + strand, within ABIE41_RS15755 at 3228.284 kb on + strand, within ABIE41_RS15755 at 3228.304 kb on + strand, within ABIE41_RS15755 at 3228.339 kb on + strand at 3228.339 kb on + strand at 3228.340 kb on - strand at 3228.340 kb on - strand at 3228.340 kb on - strand at 3228.340 kb on - strand at 3228.340 kb on - strand at 3228.645 kb on + strand at 3228.680 kb on + strand, within ABIE41_RS15760 at 3228.691 kb on - strand, within ABIE41_RS15760 at 3228.691 kb on - strand, within ABIE41_RS15760 at 3229.258 kb on + strand, within ABIE41_RS15765 at 3229.258 kb on + strand, within ABIE41_RS15765 at 3229.258 kb on + strand, within ABIE41_RS15765 at 3229.258 kb on + strand, within ABIE41_RS15765 at 3229.259 kb on - strand, within ABIE41_RS15765
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM remove 3,227,365 + +0.9 3,227,775 - ABIE41_RS15755 0.32 -0.7 3,227,775 - ABIE41_RS15755 0.32 +0.6 3,227,775 - ABIE41_RS15755 0.32 +0.1 3,227,775 - ABIE41_RS15755 0.32 -0.5 3,227,792 + ABIE41_RS15755 0.34 +0.1 3,227,793 - ABIE41_RS15755 0.34 -0.4 3,228,040 + ABIE41_RS15755 0.59 +0.2 3,228,040 + ABIE41_RS15755 0.59 -0.0 3,228,040 + ABIE41_RS15755 0.59 +0.9 3,228,041 - ABIE41_RS15755 0.59 -0.6 3,228,041 - ABIE41_RS15755 0.59 +0.0 3,228,130 + ABIE41_RS15755 0.68 -0.6 3,228,146 + ABIE41_RS15755 0.70 -0.1 3,228,147 - ABIE41_RS15755 0.70 +0.0 3,228,200 + ABIE41_RS15755 0.76 -1.5 3,228,284 + ABIE41_RS15755 0.84 +0.1 3,228,284 + ABIE41_RS15755 0.84 +1.4 3,228,304 + ABIE41_RS15755 0.86 -0.2 3,228,339 + +0.1 3,228,339 + -0.5 3,228,340 - -0.7 3,228,340 - -1.2 3,228,340 - +0.9 3,228,340 - +0.7 3,228,340 - -0.3 3,228,645 + -0.4 3,228,680 + ABIE41_RS15760 0.18 -0.8 3,228,691 - ABIE41_RS15760 0.21 -1.2 3,228,691 - ABIE41_RS15760 0.21 -0.6 3,229,258 + ABIE41_RS15765 0.38 +1.9 3,229,258 + ABIE41_RS15765 0.38 -0.7 3,229,258 + ABIE41_RS15765 0.38 +0.4 3,229,258 + ABIE41_RS15765 0.38 +0.2 3,229,259 - ABIE41_RS15765 0.38 +0.0
Or see this region's nucleotide sequence