Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14115

Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14110 and ABIE41_RS14115 are separated by 104 nucleotidesABIE41_RS14115 and ABIE41_RS14120 are separated by 4 nucleotidesABIE41_RS14120 and ABIE41_RS14125 are separated by 43 nucleotidesABIE41_RS14125 and ABIE41_RS14130 are separated by 19 nucleotides ABIE41_RS14110: ABIE41_RS14110 - hypothetical protein, at 2,892,923 to 2,893,897 _RS14110 ABIE41_RS14115: ABIE41_RS14115 - nitroreductase, at 2,894,002 to 2,894,571 _RS14115 ABIE41_RS14120: ABIE41_RS14120 - flavin reductase family protein, at 2,894,576 to 2,895,181 _RS14120 ABIE41_RS14125: ABIE41_RS14125 - heavy-metal-associated domain-containing protein, at 2,895,225 to 2,895,431 _RS14125 ABIE41_RS14130: ABIE41_RS14130 - CoA ester lyase, at 2,895,451 to 2,896,329 _RS14130 Position (kb) 2894 2895Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2893.017 kb on + strandat 2893.242 kb on + strand, within ABIE41_RS14110at 2893.243 kb on - strand, within ABIE41_RS14110at 2893.260 kb on + strand, within ABIE41_RS14110at 2893.261 kb on - strand, within ABIE41_RS14110at 2893.303 kb on + strand, within ABIE41_RS14110at 2893.304 kb on - strand, within ABIE41_RS14110at 2893.506 kb on + strand, within ABIE41_RS14110at 2893.507 kb on - strand, within ABIE41_RS14110at 2893.507 kb on - strand, within ABIE41_RS14110at 2893.967 kb on + strandat 2893.967 kb on + strandat 2893.967 kb on + strandat 2893.967 kb on + strandat 2893.968 kb on - strandat 2893.968 kb on - strandat 2893.968 kb on - strandat 2893.968 kb on - strandat 2893.968 kb on - strandat 2894.011 kb on - strandat 2894.560 kb on + strandat 2894.582 kb on + strandat 2894.582 kb on + strandat 2894.582 kb on + strandat 2894.582 kb on + strandat 2894.582 kb on + strandat 2894.583 kb on - strandat 2894.702 kb on + strand, within ABIE41_RS14120at 2894.708 kb on + strand, within ABIE41_RS14120at 2894.709 kb on - strand, within ABIE41_RS14120at 2895.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM
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2,893,017 + -0.5
2,893,242 + ABIE41_RS14110 0.33 -3.2
2,893,243 - ABIE41_RS14110 0.33 +0.6
2,893,260 + ABIE41_RS14110 0.35 -0.9
2,893,261 - ABIE41_RS14110 0.35 -1.6
2,893,303 + ABIE41_RS14110 0.39 -1.9
2,893,304 - ABIE41_RS14110 0.39 -0.4
2,893,506 + ABIE41_RS14110 0.60 -1.3
2,893,507 - ABIE41_RS14110 0.60 -0.8
2,893,507 - ABIE41_RS14110 0.60 -1.0
2,893,967 + -0.8
2,893,967 + +3.3
2,893,967 + +0.4
2,893,967 + +0.0
2,893,968 - -0.4
2,893,968 - -0.4
2,893,968 - +0.3
2,893,968 - +0.3
2,893,968 - -0.0
2,894,011 - +0.7
2,894,560 + +0.9
2,894,582 + +0.9
2,894,582 + -0.2
2,894,582 + +0.4
2,894,582 + +0.2
2,894,582 + -0.5
2,894,583 - +0.7
2,894,702 + ABIE41_RS14120 0.21 -1.8
2,894,708 + ABIE41_RS14120 0.22 +0.5
2,894,709 - ABIE41_RS14120 0.22 +0.5
2,895,132 - +0.4

Or see this region's nucleotide sequence