Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14110 and ABIE41_RS14115 are separated by 104 nucleotides ABIE41_RS14115 and ABIE41_RS14120 are separated by 4 nucleotides ABIE41_RS14120 and ABIE41_RS14125 are separated by 43 nucleotides ABIE41_RS14125 and ABIE41_RS14130 are separated by 19 nucleotides
ABIE41_RS14110: ABIE41_RS14110 - hypothetical protein, at 2,892,923 to 2,893,897
_RS14110
ABIE41_RS14115: ABIE41_RS14115 - nitroreductase, at 2,894,002 to 2,894,571
_RS14115
ABIE41_RS14120: ABIE41_RS14120 - flavin reductase family protein, at 2,894,576 to 2,895,181
_RS14120
ABIE41_RS14125: ABIE41_RS14125 - heavy-metal-associated domain-containing protein, at 2,895,225 to 2,895,431
_RS14125
ABIE41_RS14130: ABIE41_RS14130 - CoA ester lyase, at 2,895,451 to 2,896,329
_RS14130
Position (kb)
2894
2895 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2893.017 kb on + strand at 2893.242 kb on + strand, within ABIE41_RS14110 at 2893.243 kb on - strand, within ABIE41_RS14110 at 2893.260 kb on + strand, within ABIE41_RS14110 at 2893.261 kb on - strand, within ABIE41_RS14110 at 2893.303 kb on + strand, within ABIE41_RS14110 at 2893.304 kb on - strand, within ABIE41_RS14110 at 2893.506 kb on + strand, within ABIE41_RS14110 at 2893.507 kb on - strand, within ABIE41_RS14110 at 2893.507 kb on - strand, within ABIE41_RS14110 at 2893.967 kb on + strand at 2893.967 kb on + strand at 2893.967 kb on + strand at 2893.967 kb on + strand at 2893.968 kb on - strand at 2893.968 kb on - strand at 2893.968 kb on - strand at 2893.968 kb on - strand at 2893.968 kb on - strand at 2894.011 kb on - strand at 2894.560 kb on + strand at 2894.582 kb on + strand at 2894.582 kb on + strand at 2894.582 kb on + strand at 2894.582 kb on + strand at 2894.582 kb on + strand at 2894.583 kb on - strand at 2894.702 kb on + strand, within ABIE41_RS14120 at 2894.708 kb on + strand, within ABIE41_RS14120 at 2894.709 kb on - strand, within ABIE41_RS14120 at 2895.132 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM remove 2,893,017 + -0.5 2,893,242 + ABIE41_RS14110 0.33 -3.2 2,893,243 - ABIE41_RS14110 0.33 +0.6 2,893,260 + ABIE41_RS14110 0.35 -0.9 2,893,261 - ABIE41_RS14110 0.35 -1.6 2,893,303 + ABIE41_RS14110 0.39 -1.9 2,893,304 - ABIE41_RS14110 0.39 -0.4 2,893,506 + ABIE41_RS14110 0.60 -1.3 2,893,507 - ABIE41_RS14110 0.60 -0.8 2,893,507 - ABIE41_RS14110 0.60 -1.0 2,893,967 + -0.8 2,893,967 + +3.3 2,893,967 + +0.4 2,893,967 + +0.0 2,893,968 - -0.4 2,893,968 - -0.4 2,893,968 - +0.3 2,893,968 - +0.3 2,893,968 - -0.0 2,894,011 - +0.7 2,894,560 + +0.9 2,894,582 + +0.9 2,894,582 + -0.2 2,894,582 + +0.4 2,894,582 + +0.2 2,894,582 + -0.5 2,894,583 - +0.7 2,894,702 + ABIE41_RS14120 0.21 -1.8 2,894,708 + ABIE41_RS14120 0.22 +0.5 2,894,709 - ABIE41_RS14120 0.22 +0.5 2,895,132 - +0.4
Or see this region's nucleotide sequence