Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08915

Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08910 and ABIE41_RS08915 are separated by 165 nucleotidesABIE41_RS08915 and ABIE41_RS08920 are separated by 75 nucleotidesABIE41_RS08920 and ABIE41_RS08925 are separated by 79 nucleotidesABIE41_RS08925 and ABIE41_RS08930 overlap by 1 nucleotides ABIE41_RS08910: ABIE41_RS08910 - phosphate regulon transcriptional regulator PhoB, at 1,843,711 to 1,844,409 _RS08910 ABIE41_RS08915: ABIE41_RS08915 - TIGR03862 family flavoprotein, at 1,844,575 to 1,845,828 _RS08915 ABIE41_RS08920: ABIE41_RS08920 - hypothetical protein, at 1,845,904 to 1,846,356 _RS08920 ABIE41_RS08925: ABIE41_RS08925 - DUF2945 domain-containing protein, at 1,846,436 to 1,846,654 _RS08925 ABIE41_RS08930: ABIE41_RS08930 - hypothetical protein, at 1,846,654 to 1,846,977 _RS08930 Position (kb) 1844 1845 1846Strain fitness (log2 ratio) -1 0 1 2at 1843.768 kb on + strandat 1843.769 kb on - strandat 1844.014 kb on + strand, within ABIE41_RS08910at 1844.014 kb on + strand, within ABIE41_RS08910at 1844.014 kb on + strand, within ABIE41_RS08910at 1844.014 kb on + strand, within ABIE41_RS08910at 1844.015 kb on - strand, within ABIE41_RS08910at 1844.015 kb on - strand, within ABIE41_RS08910at 1844.015 kb on - strand, within ABIE41_RS08910at 1844.015 kb on - strand, within ABIE41_RS08910at 1844.230 kb on + strand, within ABIE41_RS08910at 1844.231 kb on - strand, within ABIE41_RS08910at 1844.275 kb on + strand, within ABIE41_RS08910at 1844.276 kb on - strand, within ABIE41_RS08910at 1844.276 kb on - strand, within ABIE41_RS08910at 1844.276 kb on - strand, within ABIE41_RS08910at 1844.276 kb on - strand, within ABIE41_RS08910at 1844.276 kb on - strand, within ABIE41_RS08910at 1844.277 kb on + strand, within ABIE41_RS08910at 1844.278 kb on - strand, within ABIE41_RS08910at 1844.517 kb on + strandat 1844.517 kb on + strandat 1844.731 kb on + strand, within ABIE41_RS08915at 1844.767 kb on + strand, within ABIE41_RS08915at 1844.768 kb on - strand, within ABIE41_RS08915at 1844.768 kb on - strand, within ABIE41_RS08915at 1844.768 kb on - strand, within ABIE41_RS08915at 1844.768 kb on - strand, within ABIE41_RS08915at 1845.304 kb on + strand, within ABIE41_RS08915at 1845.305 kb on - strand, within ABIE41_RS08915at 1845.305 kb on - strand, within ABIE41_RS08915at 1845.305 kb on - strand, within ABIE41_RS08915at 1846.040 kb on + strand, within ABIE41_RS08920at 1846.041 kb on - strand, within ABIE41_RS08920at 1846.088 kb on + strand, within ABIE41_RS08920at 1846.089 kb on - strand, within ABIE41_RS08920at 1846.089 kb on - strand, within ABIE41_RS08920at 1846.089 kb on - strand, within ABIE41_RS08920at 1846.091 kb on + strand, within ABIE41_RS08920at 1846.092 kb on - strand, within ABIE41_RS08920at 1846.092 kb on - strand, within ABIE41_RS08920at 1846.110 kb on - strand, within ABIE41_RS08920at 1846.110 kb on - strand, within ABIE41_RS08920at 1846.133 kb on + strand, within ABIE41_RS08920at 1846.134 kb on - strand, within ABIE41_RS08920at 1846.589 kb on + strand, within ABIE41_RS08925at 1846.590 kb on - strand, within ABIE41_RS08925at 1846.825 kb on + strand, within ABIE41_RS08930at 1846.825 kb on + strand, within ABIE41_RS08930

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM
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1,843,768 + -0.4
1,843,769 - -1.0
1,844,014 + ABIE41_RS08910 0.43 +0.4
1,844,014 + ABIE41_RS08910 0.43 -0.8
1,844,014 + ABIE41_RS08910 0.43 -1.0
1,844,014 + ABIE41_RS08910 0.43 -1.2
1,844,015 - ABIE41_RS08910 0.43 -0.7
1,844,015 - ABIE41_RS08910 0.43 -0.3
1,844,015 - ABIE41_RS08910 0.43 -0.2
1,844,015 - ABIE41_RS08910 0.43 -0.4
1,844,230 + ABIE41_RS08910 0.74 +0.6
1,844,231 - ABIE41_RS08910 0.74 -0.5
1,844,275 + ABIE41_RS08910 0.81 -0.6
1,844,276 - ABIE41_RS08910 0.81 +0.4
1,844,276 - ABIE41_RS08910 0.81 +0.0
1,844,276 - ABIE41_RS08910 0.81 -0.8
1,844,276 - ABIE41_RS08910 0.81 -1.0
1,844,276 - ABIE41_RS08910 0.81 -0.8
1,844,277 + ABIE41_RS08910 0.81 -0.5
1,844,278 - ABIE41_RS08910 0.81 +1.0
1,844,517 + +0.2
1,844,517 + +0.6
1,844,731 + ABIE41_RS08915 0.12 +0.0
1,844,767 + ABIE41_RS08915 0.15 +0.0
1,844,768 - ABIE41_RS08915 0.15 +1.3
1,844,768 - ABIE41_RS08915 0.15 +0.2
1,844,768 - ABIE41_RS08915 0.15 +0.7
1,844,768 - ABIE41_RS08915 0.15 +2.2
1,845,304 + ABIE41_RS08915 0.58 +0.5
1,845,305 - ABIE41_RS08915 0.58 -0.8
1,845,305 - ABIE41_RS08915 0.58 -0.1
1,845,305 - ABIE41_RS08915 0.58 +0.6
1,846,040 + ABIE41_RS08920 0.30 -0.7
1,846,041 - ABIE41_RS08920 0.30 +0.4
1,846,088 + ABIE41_RS08920 0.41 +0.1
1,846,089 - ABIE41_RS08920 0.41 +0.0
1,846,089 - ABIE41_RS08920 0.41 +0.6
1,846,089 - ABIE41_RS08920 0.41 +0.8
1,846,091 + ABIE41_RS08920 0.41 -0.1
1,846,092 - ABIE41_RS08920 0.42 -0.0
1,846,092 - ABIE41_RS08920 0.42 +2.0
1,846,110 - ABIE41_RS08920 0.45 -0.4
1,846,110 - ABIE41_RS08920 0.45 -0.1
1,846,133 + ABIE41_RS08920 0.51 -1.2
1,846,134 - ABIE41_RS08920 0.51 +0.7
1,846,589 + ABIE41_RS08925 0.70 +0.7
1,846,590 - ABIE41_RS08925 0.70 -1.1
1,846,825 + ABIE41_RS08930 0.53 +0.3
1,846,825 + ABIE41_RS08930 0.53 +0.9

Or see this region's nucleotide sequence