Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28180 and ABID97_RS28185 are separated by 97 nucleotides ABID97_RS28185 and ABID97_RS28190 are separated by 83 nucleotides ABID97_RS28190 and ABID97_RS28195 are separated by 177 nucleotides
ABID97_RS28180: ABID97_RS28180 - oxalate/formate MFS antiporter, at 557,051 to 558,406
_RS28180
ABID97_RS28185: ABID97_RS28185 - response regulator transcription factor, at 558,504 to 559,253
_RS28185
ABID97_RS28190: ABID97_RS28190 - alpha/beta fold hydrolase, at 559,337 to 559,990
_RS28190
ABID97_RS28195: ABID97_RS28195 - CaiB/BaiF CoA-transferase family protein, at 560,168 to 561,349
_RS28195
Position (kb) 559
560 Strain fitness (log2 ratio) -1
0
1 at 558.904 kb on + strand, within ABID97_RS28185 at 558.905 kb on - strand, within ABID97_RS28185 at 558.905 kb on - strand, within ABID97_RS28185 at 559.305 kb on - strand at 559.339 kb on - strand at 559.449 kb on + strand, within ABID97_RS28190 at 559.450 kb on - strand, within ABID97_RS28190 at 559.648 kb on - strand, within ABID97_RS28190 at 559.696 kb on - strand, within ABID97_RS28190 at 560.600 kb on + strand, within ABID97_RS28195 at 560.886 kb on - strand, within ABID97_RS28195 at 560.886 kb on - strand, within ABID97_RS28195
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 558,904 + ABID97_RS28185 0.53 +0.1 558,905 - ABID97_RS28185 0.53 -1.5 558,905 - ABID97_RS28185 0.53 +0.1 559,305 - +0.8 559,339 - -0.6 559,449 + ABID97_RS28190 0.17 -0.8 559,450 - ABID97_RS28190 0.17 -1.6 559,648 - ABID97_RS28190 0.48 -0.5 559,696 - ABID97_RS28190 0.55 -0.5 560,600 + ABID97_RS28195 0.37 -0.3 560,886 - ABID97_RS28195 0.61 -0.5 560,886 - ABID97_RS28195 0.61 -0.2
Or see this region's nucleotide sequence