Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28135 and ABID97_RS28140 are separated by 190 nucleotides ABID97_RS28140 and ABID97_RS28145 are separated by 170 nucleotides
ABID97_RS28135: ABID97_RS28135 - alpha/beta hydrolase, at 545,918 to 546,940
_RS28135
ABID97_RS28140: ABID97_RS28140 - hypothetical protein, at 547,131 to 547,550
_RS28140
ABID97_RS28145: ABID97_RS28145 - methyltransferase domain-containing protein, at 547,721 to 548,533
_RS28145
Position (kb) 547
548 Strain fitness (log2 ratio) -2
-1
0
1 at 546.145 kb on - strand, within ABID97_RS28135 at 546.351 kb on + strand, within ABID97_RS28135 at 546.352 kb on - strand, within ABID97_RS28135 at 546.360 kb on + strand, within ABID97_RS28135 at 546.762 kb on + strand, within ABID97_RS28135 at 546.762 kb on + strand, within ABID97_RS28135 at 546.762 kb on + strand, within ABID97_RS28135 at 546.762 kb on + strand, within ABID97_RS28135 at 546.763 kb on - strand, within ABID97_RS28135 at 547.062 kb on + strand at 547.063 kb on - strand at 547.360 kb on + strand, within ABID97_RS28140 at 547.402 kb on + strand, within ABID97_RS28140 at 547.402 kb on + strand, within ABID97_RS28140 at 547.402 kb on + strand, within ABID97_RS28140 at 547.403 kb on - strand, within ABID97_RS28140 at 547.403 kb on - strand, within ABID97_RS28140 at 547.403 kb on - strand, within ABID97_RS28140 at 547.405 kb on + strand, within ABID97_RS28140 at 547.405 kb on + strand, within ABID97_RS28140 at 547.406 kb on - strand, within ABID97_RS28140 at 547.406 kb on - strand, within ABID97_RS28140 at 547.406 kb on - strand, within ABID97_RS28140 at 547.592 kb on + strand at 547.766 kb on + strand at 547.766 kb on + strand at 547.803 kb on - strand, within ABID97_RS28145 at 547.803 kb on - strand, within ABID97_RS28145 at 547.923 kb on - strand, within ABID97_RS28145
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 546,145 - ABID97_RS28135 0.22 -1.8 546,351 + ABID97_RS28135 0.42 -0.7 546,352 - ABID97_RS28135 0.42 -1.1 546,360 + ABID97_RS28135 0.43 +1.0 546,762 + ABID97_RS28135 0.83 -0.9 546,762 + ABID97_RS28135 0.83 -0.2 546,762 + ABID97_RS28135 0.83 +0.4 546,762 + ABID97_RS28135 0.83 -0.4 546,763 - ABID97_RS28135 0.83 -0.2 547,062 + +0.3 547,063 - +0.7 547,360 + ABID97_RS28140 0.55 +0.0 547,402 + ABID97_RS28140 0.65 -0.8 547,402 + ABID97_RS28140 0.65 +0.7 547,402 + ABID97_RS28140 0.65 -0.0 547,403 - ABID97_RS28140 0.65 +0.9 547,403 - ABID97_RS28140 0.65 +0.6 547,403 - ABID97_RS28140 0.65 -0.6 547,405 + ABID97_RS28140 0.65 +0.6 547,405 + ABID97_RS28140 0.65 +0.4 547,406 - ABID97_RS28140 0.65 -1.1 547,406 - ABID97_RS28140 0.65 -0.1 547,406 - ABID97_RS28140 0.65 +0.0 547,592 + -0.5 547,766 + -0.1 547,766 + +0.1 547,803 - ABID97_RS28145 0.10 -0.2 547,803 - ABID97_RS28145 0.10 +0.5 547,923 - ABID97_RS28145 0.25 -0.0
Or see this region's nucleotide sequence