Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24460 and ABID97_RS24465 are separated by 41 nucleotides ABID97_RS24465 and ABID97_RS24470 are separated by 40 nucleotides
ABID97_RS24460: ABID97_RS24460 - 2-dehydropantoate 2-reductase, at 5,063,632 to 5,064,645
_RS24460
ABID97_RS24465: ABID97_RS24465 - fumarylacetoacetate hydrolase family protein, at 5,064,687 to 5,065,463
_RS24465
ABID97_RS24470: ABID97_RS24470 - succinate--CoA ligase subunit alpha, at 5,065,504 to 5,066,403
_RS24470
Position (kb)
5064
5065
5066 Strain fitness (log2 ratio)
-2
-1
0
1 at 5063.708 kb on + strand at 5064.206 kb on + strand, within ABID97_RS24460 at 5064.206 kb on + strand, within ABID97_RS24460 at 5064.317 kb on + strand, within ABID97_RS24460 at 5064.637 kb on + strand at 5064.637 kb on + strand at 5064.637 kb on + strand at 5064.637 kb on + strand at 5064.637 kb on + strand at 5064.638 kb on - strand at 5064.638 kb on - strand at 5064.871 kb on + strand, within ABID97_RS24465 at 5065.052 kb on - strand, within ABID97_RS24465 at 5065.187 kb on - strand, within ABID97_RS24465 at 5065.210 kb on + strand, within ABID97_RS24465 at 5065.211 kb on - strand, within ABID97_RS24465 at 5065.211 kb on - strand, within ABID97_RS24465 at 5065.521 kb on - strand at 5065.920 kb on - strand, within ABID97_RS24470 at 5066.180 kb on + strand, within ABID97_RS24470 at 5066.180 kb on + strand, within ABID97_RS24470 at 5066.180 kb on + strand, within ABID97_RS24470 at 5066.181 kb on - strand, within ABID97_RS24470
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 5,063,708 + +0.6 5,064,206 + ABID97_RS24460 0.57 -0.4 5,064,206 + ABID97_RS24460 0.57 -0.6 5,064,317 + ABID97_RS24460 0.68 -0.1 5,064,637 + -0.4 5,064,637 + -0.1 5,064,637 + -0.8 5,064,637 + +0.3 5,064,637 + +0.3 5,064,638 - +0.2 5,064,638 - +0.1 5,064,871 + ABID97_RS24465 0.24 -1.3 5,065,052 - ABID97_RS24465 0.47 -0.4 5,065,187 - ABID97_RS24465 0.64 -0.3 5,065,210 + ABID97_RS24465 0.67 -0.3 5,065,211 - ABID97_RS24465 0.67 -1.0 5,065,211 - ABID97_RS24465 0.67 -0.7 5,065,521 - -0.1 5,065,920 - ABID97_RS24470 0.46 -1.0 5,066,180 + ABID97_RS24470 0.75 +0.7 5,066,180 + ABID97_RS24470 0.75 -0.7 5,066,180 + ABID97_RS24470 0.75 -1.0 5,066,181 - ABID97_RS24470 0.75 -1.8
Or see this region's nucleotide sequence