Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24100 and ABID97_RS24105 overlap by 58 nucleotides ABID97_RS24105 and ABID97_RS24110 overlap by 4 nucleotides ABID97_RS24110 and ABID97_RS24115 are separated by 58 nucleotides
ABID97_RS24100: ABID97_RS24100 - adenylate/guanylate cyclase domain-containing protein, at 4,979,243 to 4,980,949
_RS24100
ABID97_RS24105: ABID97_RS24105 - RNA 3'-terminal phosphate cyclase, at 4,980,892 to 4,981,932
_RS24105
ABID97_RS24110: ABID97_RS24110 - nucleotidyltransferase domain-containing protein, at 4,981,929 to 4,982,783
_RS24110
ABID97_RS24115: ABID97_RS24115 - hypothetical protein, at 4,982,842 to 4,983,516
_RS24115
Position (kb) 4980
4981
4982 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4979.915 kb on + strand, within ABID97_RS24100 at 4979.915 kb on + strand, within ABID97_RS24100 at 4980.413 kb on + strand, within ABID97_RS24100 at 4980.413 kb on + strand, within ABID97_RS24100 at 4980.413 kb on + strand, within ABID97_RS24100 at 4980.414 kb on - strand, within ABID97_RS24100 at 4980.414 kb on - strand, within ABID97_RS24100 at 4980.414 kb on - strand, within ABID97_RS24100 at 4980.428 kb on + strand, within ABID97_RS24100 at 4980.645 kb on + strand, within ABID97_RS24100 at 4980.645 kb on + strand, within ABID97_RS24100 at 4980.645 kb on + strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.947 kb on + strand at 4980.947 kb on + strand at 4981.208 kb on + strand, within ABID97_RS24105 at 4981.209 kb on - strand, within ABID97_RS24105 at 4981.881 kb on + strand at 4982.269 kb on + strand, within ABID97_RS24110 at 4982.269 kb on + strand, within ABID97_RS24110 at 4982.269 kb on + strand, within ABID97_RS24110 at 4982.270 kb on - strand, within ABID97_RS24110 at 4982.270 kb on - strand, within ABID97_RS24110 at 4982.270 kb on - strand, within ABID97_RS24110 at 4982.270 kb on - strand, within ABID97_RS24110 at 4982.275 kb on + strand, within ABID97_RS24110 at 4982.275 kb on + strand, within ABID97_RS24110 at 4982.276 kb on - strand, within ABID97_RS24110 at 4982.276 kb on - strand, within ABID97_RS24110 at 4982.342 kb on - strand, within ABID97_RS24110 at 4982.422 kb on + strand, within ABID97_RS24110 at 4982.570 kb on - strand, within ABID97_RS24110 at 4982.590 kb on + strand, within ABID97_RS24110 at 4982.590 kb on + strand, within ABID97_RS24110 at 4982.590 kb on + strand, within ABID97_RS24110 at 4982.590 kb on + strand, within ABID97_RS24110 at 4982.691 kb on + strand, within ABID97_RS24110 at 4982.692 kb on - strand, within ABID97_RS24110
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 4,979,915 + ABID97_RS24100 0.39 -0.4 4,979,915 + ABID97_RS24100 0.39 -0.2 4,980,413 + ABID97_RS24100 0.69 +0.0 4,980,413 + ABID97_RS24100 0.69 -0.2 4,980,413 + ABID97_RS24100 0.69 -0.3 4,980,414 - ABID97_RS24100 0.69 -0.1 4,980,414 - ABID97_RS24100 0.69 -2.8 4,980,414 - ABID97_RS24100 0.69 -0.1 4,980,428 + ABID97_RS24100 0.69 -0.1 4,980,645 + ABID97_RS24100 0.82 +0.1 4,980,645 + ABID97_RS24100 0.82 -0.3 4,980,645 + ABID97_RS24100 0.82 -0.8 4,980,646 - ABID97_RS24100 0.82 +1.0 4,980,646 - ABID97_RS24100 0.82 -0.9 4,980,646 - ABID97_RS24100 0.82 +0.2 4,980,646 - ABID97_RS24100 0.82 -1.1 4,980,646 - ABID97_RS24100 0.82 -0.2 4,980,947 + -0.1 4,980,947 + +0.8 4,981,208 + ABID97_RS24105 0.30 -0.6 4,981,209 - ABID97_RS24105 0.30 -0.3 4,981,881 + -0.6 4,982,269 + ABID97_RS24110 0.40 -0.9 4,982,269 + ABID97_RS24110 0.40 +1.0 4,982,269 + ABID97_RS24110 0.40 -0.5 4,982,270 - ABID97_RS24110 0.40 -0.5 4,982,270 - ABID97_RS24110 0.40 +0.5 4,982,270 - ABID97_RS24110 0.40 -1.0 4,982,270 - ABID97_RS24110 0.40 -0.8 4,982,275 + ABID97_RS24110 0.40 -0.1 4,982,275 + ABID97_RS24110 0.40 +0.2 4,982,276 - ABID97_RS24110 0.41 +2.0 4,982,276 - ABID97_RS24110 0.41 +0.5 4,982,342 - ABID97_RS24110 0.48 +0.0 4,982,422 + ABID97_RS24110 0.58 +1.2 4,982,570 - ABID97_RS24110 0.75 -0.2 4,982,590 + ABID97_RS24110 0.77 +0.0 4,982,590 + ABID97_RS24110 0.77 -0.5 4,982,590 + ABID97_RS24110 0.77 -0.5 4,982,590 + ABID97_RS24110 0.77 -0.2 4,982,691 + ABID97_RS24110 0.89 +0.0 4,982,692 - ABID97_RS24110 0.89 -0.7
Or see this region's nucleotide sequence