Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21930 and ABID97_RS21935 are separated by 7 nucleotides ABID97_RS21935 and ABID97_RS21940 are separated by 38 nucleotides
ABID97_RS21930: ABID97_RS21930 - adenylosuccinate synthetase, at 4,536,210 to 4,537,562
_RS21930
ABID97_RS21935: ABID97_RS21935 - VWA domain-containing protein, at 4,537,570 to 4,538,541
_RS21935
ABID97_RS21940: ABID97_RS21940 - protein kinase family protein, at 4,538,580 to 4,539,557
_RS21940
Position (kb) 4537
4538
4539 Strain fitness (log2 ratio) -1
0
1 at 4536.688 kb on + strand, within ABID97_RS21930 at 4536.689 kb on - strand, within ABID97_RS21930 at 4536.689 kb on - strand, within ABID97_RS21930 at 4537.664 kb on + strand at 4537.665 kb on - strand at 4538.036 kb on + strand, within ABID97_RS21935 at 4538.037 kb on - strand, within ABID97_RS21935 at 4538.094 kb on - strand, within ABID97_RS21935 at 4538.094 kb on - strand, within ABID97_RS21935 at 4538.094 kb on - strand, within ABID97_RS21935 at 4538.108 kb on + strand, within ABID97_RS21935 at 4538.108 kb on + strand, within ABID97_RS21935 at 4538.109 kb on - strand, within ABID97_RS21935 at 4538.148 kb on - strand, within ABID97_RS21935 at 4538.508 kb on + strand at 4539.099 kb on + strand, within ABID97_RS21940 at 4539.163 kb on + strand, within ABID97_RS21940 at 4539.163 kb on + strand, within ABID97_RS21940 at 4539.164 kb on - strand, within ABID97_RS21940 at 4539.164 kb on - strand, within ABID97_RS21940 at 4539.164 kb on - strand, within ABID97_RS21940 at 4539.472 kb on + strand at 4539.472 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 4,536,688 + ABID97_RS21930 0.35 +0.3 4,536,689 - ABID97_RS21930 0.35 -0.2 4,536,689 - ABID97_RS21930 0.35 -0.2 4,537,664 + -0.9 4,537,665 - -0.3 4,538,036 + ABID97_RS21935 0.48 +1.0 4,538,037 - ABID97_RS21935 0.48 +0.5 4,538,094 - ABID97_RS21935 0.54 -0.0 4,538,094 - ABID97_RS21935 0.54 +0.1 4,538,094 - ABID97_RS21935 0.54 +1.0 4,538,108 + ABID97_RS21935 0.55 -0.2 4,538,108 + ABID97_RS21935 0.55 +0.6 4,538,109 - ABID97_RS21935 0.55 +0.5 4,538,148 - ABID97_RS21935 0.59 +0.1 4,538,508 + +0.0 4,539,099 + ABID97_RS21940 0.53 +0.3 4,539,163 + ABID97_RS21940 0.60 -0.2 4,539,163 + ABID97_RS21940 0.60 -0.2 4,539,164 - ABID97_RS21940 0.60 +0.1 4,539,164 - ABID97_RS21940 0.60 -0.0 4,539,164 - ABID97_RS21940 0.60 -0.8 4,539,472 + +0.1 4,539,472 + -0.4
Or see this region's nucleotide sequence