Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12960

Experiment: phage_S63 5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12955 and ABID97_RS12960 are separated by 4 nucleotidesABID97_RS12960 and ABID97_RS12965 are separated by 38 nucleotidesABID97_RS12965 and ABID97_RS12970 overlap by 23 nucleotides ABID97_RS12955: ABID97_RS12955 - type VI secretion system tip protein TssI/VgrG, at 2,686,760 to 2,689,810 _RS12955 ABID97_RS12960: ABID97_RS12960 - type VI secretion system tip protein TssI/VgrG, at 2,689,815 to 2,693,045 _RS12960 ABID97_RS12965: ABID97_RS12965 - DUF2169 domain-containing protein, at 2,693,084 to 2,694,040 _RS12965 ABID97_RS12970: ABID97_RS12970 - pentapeptide repeat-containing protein, at 2,694,018 to 2,696,165 _RS12970 Position (kb) 2689 2690 2691 2692 2693 2694Strain fitness (log2 ratio) -2 -1 0 1at 2688.988 kb on - strand, within ABID97_RS12955at 2690.169 kb on + strand, within ABID97_RS12960at 2690.283 kb on + strand, within ABID97_RS12960at 2690.349 kb on + strand, within ABID97_RS12960at 2690.350 kb on - strand, within ABID97_RS12960at 2690.350 kb on - strand, within ABID97_RS12960at 2690.440 kb on - strand, within ABID97_RS12960at 2691.406 kb on - strand, within ABID97_RS12960at 2692.512 kb on + strand, within ABID97_RS12960at 2693.712 kb on - strand, within ABID97_RS12965

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_S63 5 MOI
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2,688,988 - ABID97_RS12955 0.73 -1.8
2,690,169 + ABID97_RS12960 0.11 -0.9
2,690,283 + ABID97_RS12960 0.14 +1.6
2,690,349 + ABID97_RS12960 0.17 -1.4
2,690,350 - ABID97_RS12960 0.17 +0.3
2,690,350 - ABID97_RS12960 0.17 -0.1
2,690,440 - ABID97_RS12960 0.19 -1.2
2,691,406 - ABID97_RS12960 0.49 -0.4
2,692,512 + ABID97_RS12960 0.83 -0.1
2,693,712 - ABID97_RS12965 0.66 -0.8

Or see this region's nucleotide sequence