Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12955 and ABID97_RS12960 are separated by 4 nucleotides ABID97_RS12960 and ABID97_RS12965 are separated by 38 nucleotides ABID97_RS12965 and ABID97_RS12970 overlap by 23 nucleotides
ABID97_RS12955: ABID97_RS12955 - type VI secretion system tip protein TssI/VgrG, at 2,686,760 to 2,689,810
_RS12955
ABID97_RS12960: ABID97_RS12960 - type VI secretion system tip protein TssI/VgrG, at 2,689,815 to 2,693,045
_RS12960
ABID97_RS12965: ABID97_RS12965 - DUF2169 domain-containing protein, at 2,693,084 to 2,694,040
_RS12965
ABID97_RS12970: ABID97_RS12970 - pentapeptide repeat-containing protein, at 2,694,018 to 2,696,165
_RS12970
Position (kb)
2689
2690
2691
2692
2693
2694 Strain fitness (log2 ratio)
-2
-1
0
1 at 2688.988 kb on - strand, within ABID97_RS12955 at 2690.169 kb on + strand, within ABID97_RS12960 at 2690.283 kb on + strand, within ABID97_RS12960 at 2690.349 kb on + strand, within ABID97_RS12960 at 2690.350 kb on - strand, within ABID97_RS12960 at 2690.350 kb on - strand, within ABID97_RS12960 at 2690.440 kb on - strand, within ABID97_RS12960 at 2691.406 kb on - strand, within ABID97_RS12960 at 2692.512 kb on + strand, within ABID97_RS12960 at 2693.712 kb on - strand, within ABID97_RS12965
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 2,688,988 - ABID97_RS12955 0.73 -1.8 2,690,169 + ABID97_RS12960 0.11 -0.9 2,690,283 + ABID97_RS12960 0.14 +1.6 2,690,349 + ABID97_RS12960 0.17 -1.4 2,690,350 - ABID97_RS12960 0.17 +0.3 2,690,350 - ABID97_RS12960 0.17 -0.1 2,690,440 - ABID97_RS12960 0.19 -1.2 2,691,406 - ABID97_RS12960 0.49 -0.4 2,692,512 + ABID97_RS12960 0.83 -0.1 2,693,712 - ABID97_RS12965 0.66 -0.8
Or see this region's nucleotide sequence