Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11975 and ABID97_RS11980 are separated by 206 nucleotides ABID97_RS11980 and ABID97_RS11985 are separated by 33 nucleotides ABID97_RS11985 and ABID97_RS11990 are separated by 244 nucleotides ABID97_RS11990 and ABID97_RS11995 are separated by 12 nucleotides
ABID97_RS11975: ABID97_RS11975 - manganese catalase family protein, at 2,474,077 to 2,474,997
_RS11975
ABID97_RS11980: ABID97_RS11980 - KGG domain-containing protein, at 2,475,204 to 2,475,410
_RS11980
ABID97_RS11985: ABID97_RS11985 - hypothetical protein, at 2,475,444 to 2,476,013
_RS11985
ABID97_RS11990: ABID97_RS11990 - hypothetical protein, at 2,476,258 to 2,476,500
_RS11990
ABID97_RS11995: ABID97_RS11995 - SIR2 family protein, at 2,476,513 to 2,477,334
_RS11995
Position (kb)
2475
2476
2477 Strain fitness (log2 ratio)
-1
0
1 at 2474.705 kb on + strand, within ABID97_RS11975 at 2474.705 kb on + strand, within ABID97_RS11975 at 2474.970 kb on - strand at 2475.139 kb on + strand at 2475.715 kb on + strand, within ABID97_RS11985 at 2475.715 kb on + strand, within ABID97_RS11985 at 2475.918 kb on + strand, within ABID97_RS11985 at 2476.498 kb on + strand at 2476.944 kb on - strand, within ABID97_RS11995 at 2476.988 kb on + strand, within ABID97_RS11995 at 2476.989 kb on - strand, within ABID97_RS11995
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 2,474,705 + ABID97_RS11975 0.68 -0.3 2,474,705 + ABID97_RS11975 0.68 +0.3 2,474,970 - +0.3 2,475,139 + -0.1 2,475,715 + ABID97_RS11985 0.48 +1.0 2,475,715 + ABID97_RS11985 0.48 +1.6 2,475,918 + ABID97_RS11985 0.83 +0.3 2,476,498 + +0.3 2,476,944 - ABID97_RS11995 0.52 -0.2 2,476,988 + ABID97_RS11995 0.58 +0.7 2,476,989 - ABID97_RS11995 0.58 -0.3
Or see this region's nucleotide sequence