Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05360

Experiment: phage_S63 5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05350 and ABID97_RS05355 are separated by 101 nucleotidesABID97_RS05355 and ABID97_RS05360 are separated by 89 nucleotidesABID97_RS05360 and ABID97_RS05365 overlap by 20 nucleotidesABID97_RS05365 and ABID97_RS05370 overlap by 4 nucleotides ABID97_RS05350: ABID97_RS05350 - DNA-directed RNA polymerase subunit beta', at 1,117,742 to 1,121,971 _RS05350 ABID97_RS05355: ABID97_RS05355 - lema family protein, at 1,122,073 to 1,122,696 _RS05355 ABID97_RS05360: ABID97_RS05360 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 1,122,786 to 1,124,162 _RS05360 ABID97_RS05365: ABID97_RS05365 - DUF4390 domain-containing protein, at 1,124,143 to 1,124,790 _RS05365 ABID97_RS05370: ABID97_RS05370 - ATP-binding protein, at 1,124,787 to 1,127,117 _RS05370 Position (kb) 1122 1123 1124 1125Strain fitness (log2 ratio) -1 0 1 2 3at 1121.829 kb on - strandat 1121.829 kb on - strandat 1121.969 kb on + strandat 1121.970 kb on - strandat 1122.145 kb on + strand, within ABID97_RS05355at 1122.146 kb on - strand, within ABID97_RS05355at 1122.146 kb on - strand, within ABID97_RS05355at 1122.146 kb on - strand, within ABID97_RS05355at 1122.146 kb on - strand, within ABID97_RS05355at 1122.187 kb on + strand, within ABID97_RS05355at 1122.187 kb on + strand, within ABID97_RS05355at 1122.188 kb on - strand, within ABID97_RS05355at 1122.188 kb on - strand, within ABID97_RS05355at 1122.188 kb on - strand, within ABID97_RS05355at 1122.188 kb on - strand, within ABID97_RS05355at 1122.616 kb on + strand, within ABID97_RS05355at 1122.616 kb on + strand, within ABID97_RS05355at 1122.616 kb on + strand, within ABID97_RS05355at 1122.616 kb on + strand, within ABID97_RS05355at 1122.616 kb on + strand, within ABID97_RS05355at 1122.617 kb on - strand, within ABID97_RS05355at 1122.617 kb on - strand, within ABID97_RS05355at 1122.617 kb on - strand, within ABID97_RS05355at 1122.617 kb on - strand, within ABID97_RS05355at 1122.617 kb on - strand, within ABID97_RS05355at 1122.617 kb on - strand, within ABID97_RS05355at 1122.617 kb on - strand, within ABID97_RS05355at 1122.617 kb on - strand, within ABID97_RS05355at 1122.771 kb on + strandat 1122.796 kb on + strandat 1122.796 kb on + strandat 1122.796 kb on + strandat 1122.797 kb on - strandat 1122.797 kb on - strandat 1122.797 kb on - strandat 1122.800 kb on + strandat 1122.800 kb on + strandat 1122.800 kb on + strandat 1122.801 kb on - strandat 1122.801 kb on - strandat 1122.801 kb on - strandat 1122.801 kb on - strandat 1122.801 kb on - strandat 1122.801 kb on - strandat 1122.801 kb on - strandat 1122.801 kb on - strandat 1122.801 kb on - strandat 1122.847 kb on + strandat 1123.390 kb on - strand, within ABID97_RS05360at 1123.962 kb on + strand, within ABID97_RS05360at 1123.962 kb on + strand, within ABID97_RS05360at 1123.962 kb on + strand, within ABID97_RS05360at 1123.962 kb on + strand, within ABID97_RS05360at 1123.963 kb on - strand, within ABID97_RS05360at 1123.963 kb on - strand, within ABID97_RS05360at 1123.963 kb on - strand, within ABID97_RS05360at 1124.314 kb on + strand, within ABID97_RS05365at 1124.314 kb on + strand, within ABID97_RS05365at 1124.314 kb on + strand, within ABID97_RS05365at 1124.315 kb on - strand, within ABID97_RS05365at 1124.386 kb on + strand, within ABID97_RS05365at 1124.386 kb on + strand, within ABID97_RS05365at 1124.386 kb on + strand, within ABID97_RS05365at 1124.386 kb on + strand, within ABID97_RS05365at 1124.387 kb on - strand, within ABID97_RS05365at 1124.387 kb on - strand, within ABID97_RS05365at 1124.387 kb on - strand, within ABID97_RS05365at 1124.425 kb on + strand, within ABID97_RS05365at 1124.425 kb on + strand, within ABID97_RS05365at 1124.476 kb on + strand, within ABID97_RS05365at 1124.943 kb on + strandat 1124.952 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1125.130 kb on - strand, within ABID97_RS05370at 1125.130 kb on - strand, within ABID97_RS05370at 1125.130 kb on - strand, within ABID97_RS05370at 1125.141 kb on + strand, within ABID97_RS05370at 1125.142 kb on - strand, within ABID97_RS05370at 1125.142 kb on - strand, within ABID97_RS05370at 1125.142 kb on - strand, within ABID97_RS05370

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_S63 5 MOI
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1,121,829 - +0.4
1,121,829 - +2.3
1,121,969 + +1.0
1,121,970 - +0.3
1,122,145 + ABID97_RS05355 0.12 -0.8
1,122,146 - ABID97_RS05355 0.12 -0.4
1,122,146 - ABID97_RS05355 0.12 +0.1
1,122,146 - ABID97_RS05355 0.12 +0.2
1,122,146 - ABID97_RS05355 0.12 +0.7
1,122,187 + ABID97_RS05355 0.18 +0.1
1,122,187 + ABID97_RS05355 0.18 -0.1
1,122,188 - ABID97_RS05355 0.18 -1.6
1,122,188 - ABID97_RS05355 0.18 +0.4
1,122,188 - ABID97_RS05355 0.18 +0.5
1,122,188 - ABID97_RS05355 0.18 -0.4
1,122,616 + ABID97_RS05355 0.87 +0.2
1,122,616 + ABID97_RS05355 0.87 +0.6
1,122,616 + ABID97_RS05355 0.87 -0.3
1,122,616 + ABID97_RS05355 0.87 +0.1
1,122,616 + ABID97_RS05355 0.87 +0.1
1,122,617 - ABID97_RS05355 0.87 -0.0
1,122,617 - ABID97_RS05355 0.87 +0.1
1,122,617 - ABID97_RS05355 0.87 -0.4
1,122,617 - ABID97_RS05355 0.87 -0.8
1,122,617 - ABID97_RS05355 0.87 -0.4
1,122,617 - ABID97_RS05355 0.87 -1.1
1,122,617 - ABID97_RS05355 0.87 -0.7
1,122,617 - ABID97_RS05355 0.87 -1.4
1,122,771 + +1.1
1,122,796 + +0.2
1,122,796 + -0.2
1,122,796 + +0.4
1,122,797 - +0.6
1,122,797 - -0.2
1,122,797 - +0.0
1,122,800 + -0.0
1,122,800 + -0.6
1,122,800 + -0.6
1,122,801 - +0.2
1,122,801 - +0.6
1,122,801 - -0.3
1,122,801 - -0.4
1,122,801 - -0.2
1,122,801 - +0.5
1,122,801 - -0.7
1,122,801 - -0.1
1,122,801 - +0.4
1,122,847 + -0.4
1,123,390 - ABID97_RS05360 0.44 -0.2
1,123,962 + ABID97_RS05360 0.85 -1.3
1,123,962 + ABID97_RS05360 0.85 +0.2
1,123,962 + ABID97_RS05360 0.85 -0.5
1,123,962 + ABID97_RS05360 0.85 -0.1
1,123,963 - ABID97_RS05360 0.85 -0.8
1,123,963 - ABID97_RS05360 0.85 -1.1
1,123,963 - ABID97_RS05360 0.85 +0.5
1,124,314 + ABID97_RS05365 0.26 +2.1
1,124,314 + ABID97_RS05365 0.26 +2.9
1,124,314 + ABID97_RS05365 0.26 +1.1
1,124,315 - ABID97_RS05365 0.27 +0.5
1,124,386 + ABID97_RS05365 0.38 +2.1
1,124,386 + ABID97_RS05365 0.38 +0.1
1,124,386 + ABID97_RS05365 0.38 +2.1
1,124,386 + ABID97_RS05365 0.38 +3.1
1,124,387 - ABID97_RS05365 0.38 +2.1
1,124,387 - ABID97_RS05365 0.38 +1.1
1,124,387 - ABID97_RS05365 0.38 +0.1
1,124,425 + ABID97_RS05365 0.44 +1.5
1,124,425 + ABID97_RS05365 0.44 -0.2
1,124,476 + ABID97_RS05365 0.51 +1.1
1,124,943 + +1.5
1,124,952 + +2.5
1,124,955 + +0.7
1,124,955 + +0.2
1,124,955 + +0.3
1,124,955 + +1.2
1,124,955 + +0.6
1,124,955 + -0.6
1,124,955 + +1.7
1,124,955 + +1.0
1,124,955 + +0.1
1,124,955 + +1.1
1,124,955 + +1.2
1,125,130 - ABID97_RS05370 0.15 +2.1
1,125,130 - ABID97_RS05370 0.15 +1.4
1,125,130 - ABID97_RS05370 0.15 +0.5
1,125,141 + ABID97_RS05370 0.15 +0.5
1,125,142 - ABID97_RS05370 0.15 +1.1
1,125,142 - ABID97_RS05370 0.15 +0.5
1,125,142 - ABID97_RS05370 0.15 +0.1

Or see this region's nucleotide sequence