Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03585 and ABID97_RS03590 overlap by 64 nucleotides ABID97_RS03590 and ABID97_RS03595 are separated by 362 nucleotides
ABID97_RS03585: ABID97_RS03585 - T6SS effector BTH_I2691 family protein, at 736,823 to 738,811
_RS03585
ABID97_RS03590: ABID97_RS03590 - hypothetical protein, at 738,748 to 739,608
_RS03590
ABID97_RS03595: ABID97_RS03595 - hypothetical protein, at 739,971 to 740,702
_RS03595
Position (kb) 738
739
740 Strain fitness (log2 ratio) -1
0
1 at 737.771 kb on + strand, within ABID97_RS03585 at 737.889 kb on - strand, within ABID97_RS03585 at 738.049 kb on + strand, within ABID97_RS03585 at 738.279 kb on - strand, within ABID97_RS03585 at 738.383 kb on + strand, within ABID97_RS03585 at 738.384 kb on - strand, within ABID97_RS03585 at 738.564 kb on + strand, within ABID97_RS03585 at 738.713 kb on - strand at 738.924 kb on - strand at 739.127 kb on - strand, within ABID97_RS03590 at 739.333 kb on + strand, within ABID97_RS03590 at 739.393 kb on + strand, within ABID97_RS03590 at 739.606 kb on + strand at 739.606 kb on + strand at 739.704 kb on + strand at 739.760 kb on + strand at 739.870 kb on + strand at 739.871 kb on - strand at 739.892 kb on - strand at 739.916 kb on - strand at 739.916 kb on - strand at 739.934 kb on + strand at 739.949 kb on - strand at 739.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 737,771 + ABID97_RS03585 0.48 +0.1 737,889 - ABID97_RS03585 0.54 +0.1 738,049 + ABID97_RS03585 0.62 -1.3 738,279 - ABID97_RS03585 0.73 +0.4 738,383 + ABID97_RS03585 0.78 +0.4 738,384 - ABID97_RS03585 0.78 +0.0 738,564 + ABID97_RS03585 0.88 -1.1 738,713 - +1.2 738,924 - +0.4 739,127 - ABID97_RS03590 0.44 +1.0 739,333 + ABID97_RS03590 0.68 +0.3 739,393 + ABID97_RS03590 0.75 +0.1 739,606 + -0.2 739,606 + -0.9 739,704 + +1.2 739,760 + +0.2 739,870 + +0.6 739,871 - -0.8 739,892 - +0.7 739,916 - +0.4 739,916 - -0.4 739,934 + +0.2 739,949 - -0.4 739,999 - +0.6
Or see this region's nucleotide sequence