Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03280 and ABID97_RS03285 are separated by 40 nucleotides ABID97_RS03285 and ABID97_RS03290 are separated by 90 nucleotides ABID97_RS03290 and ABID97_RS03295 are separated by 15 nucleotides ABID97_RS03295 and ABID97_RS03300 are separated by 56 nucleotides
ABID97_RS03280: ABID97_RS03280 - hypothetical protein, at 663,372 to 664,613
_RS03280
ABID97_RS03285: ABID97_RS03285 - DUF1127 domain-containing protein, at 664,654 to 664,848
_RS03285
ABID97_RS03290: ABID97_RS03290 - LysR family transcriptional regulator, at 664,939 to 665,829
_RS03290
ABID97_RS03295: ABID97_RS03295 - hypothetical protein, at 665,845 to 666,345
_RS03295
ABID97_RS03300: ABID97_RS03300 - glutaminase, at 666,402 to 667,340
_RS03300
Position (kb) 664
665
666 Strain fitness (log2 ratio) -1
0
1
2 at 664.894 kb on + strand at 664.895 kb on - strand at 665.170 kb on - strand, within ABID97_RS03290 at 665.545 kb on + strand, within ABID97_RS03290 at 665.546 kb on - strand, within ABID97_RS03290 at 665.546 kb on - strand, within ABID97_RS03290 at 665.611 kb on + strand, within ABID97_RS03290 at 665.612 kb on - strand, within ABID97_RS03290 at 666.598 kb on + strand, within ABID97_RS03300 at 666.598 kb on + strand, within ABID97_RS03300 at 666.599 kb on - strand, within ABID97_RS03300 at 666.599 kb on - strand, within ABID97_RS03300 at 666.599 kb on - strand, within ABID97_RS03300 at 666.599 kb on - strand, within ABID97_RS03300 at 666.599 kb on - strand, within ABID97_RS03300 at 666.757 kb on + strand, within ABID97_RS03300 at 666.757 kb on + strand, within ABID97_RS03300
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 664,894 + -0.8 664,895 - +0.4 665,170 - ABID97_RS03290 0.26 +0.4 665,545 + ABID97_RS03290 0.68 +0.6 665,546 - ABID97_RS03290 0.68 -0.3 665,546 - ABID97_RS03290 0.68 +0.7 665,611 + ABID97_RS03290 0.75 +0.4 665,612 - ABID97_RS03290 0.76 +0.5 666,598 + ABID97_RS03300 0.21 +0.4 666,598 + ABID97_RS03300 0.21 +0.0 666,599 - ABID97_RS03300 0.21 +2.2 666,599 - ABID97_RS03300 0.21 +0.8 666,599 - ABID97_RS03300 0.21 -0.6 666,599 - ABID97_RS03300 0.21 -0.1 666,599 - ABID97_RS03300 0.21 +0.0 666,757 + ABID97_RS03300 0.38 -0.1 666,757 + ABID97_RS03300 0.38 +1.0
Or see this region's nucleotide sequence