Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02185 and ABID97_RS02190 overlap by 4 nucleotides ABID97_RS02190 and ABID97_RS02195 are separated by 7 nucleotides ABID97_RS02195 and ABID97_RS02200 are separated by 11 nucleotides
ABID97_RS02185: ABID97_RS02185 - DapH/DapD/GlmU-related protein, at 440,690 to 441,271
_RS02185
ABID97_RS02190: ABID97_RS02190 - Gfo/Idh/MocA family oxidoreductase, at 441,268 to 442,221
_RS02190
ABID97_RS02195: ABID97_RS02195 - nucleotide sugar dehydrogenase, at 442,229 to 443,515
_RS02195
ABID97_RS02200: ABID97_RS02200 - nucleoside-diphosphate sugar epimerase/dehydratase, at 443,527 to 445,434
_RS02200
Position (kb) 442
443
444 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 441.407 kb on + strand, within ABID97_RS02190 at 441.408 kb on - strand, within ABID97_RS02190 at 441.408 kb on - strand, within ABID97_RS02190 at 441.408 kb on - strand, within ABID97_RS02190 at 441.479 kb on + strand, within ABID97_RS02190 at 441.479 kb on + strand, within ABID97_RS02190 at 441.480 kb on - strand, within ABID97_RS02190 at 441.560 kb on + strand, within ABID97_RS02190 at 441.561 kb on - strand, within ABID97_RS02190 at 441.596 kb on + strand, within ABID97_RS02190 at 441.596 kb on + strand, within ABID97_RS02190 at 441.596 kb on + strand, within ABID97_RS02190 at 441.597 kb on - strand, within ABID97_RS02190 at 441.597 kb on - strand, within ABID97_RS02190 at 441.740 kb on + strand, within ABID97_RS02190 at 441.740 kb on + strand, within ABID97_RS02190 at 441.740 kb on + strand, within ABID97_RS02190 at 441.741 kb on - strand, within ABID97_RS02190 at 441.741 kb on - strand, within ABID97_RS02190 at 441.741 kb on - strand, within ABID97_RS02190 at 441.995 kb on + strand, within ABID97_RS02190 at 441.995 kb on + strand, within ABID97_RS02190 at 441.996 kb on - strand, within ABID97_RS02190 at 441.996 kb on - strand, within ABID97_RS02190 at 442.008 kb on + strand, within ABID97_RS02190 at 442.008 kb on + strand, within ABID97_RS02190 at 442.009 kb on - strand, within ABID97_RS02190 at 442.043 kb on + strand, within ABID97_RS02190 at 442.043 kb on + strand, within ABID97_RS02190 at 442.043 kb on + strand, within ABID97_RS02190 at 442.044 kb on - strand, within ABID97_RS02190 at 442.044 kb on - strand, within ABID97_RS02190 at 442.044 kb on - strand, within ABID97_RS02190 at 442.121 kb on + strand, within ABID97_RS02190 at 442.121 kb on + strand, within ABID97_RS02190 at 442.122 kb on - strand, within ABID97_RS02190 at 442.182 kb on - strand at 442.278 kb on + strand at 442.324 kb on - strand at 442.363 kb on + strand, within ABID97_RS02195 at 442.364 kb on - strand, within ABID97_RS02195 at 442.392 kb on - strand, within ABID97_RS02195 at 442.432 kb on - strand, within ABID97_RS02195 at 442.592 kb on + strand, within ABID97_RS02195 at 442.592 kb on + strand, within ABID97_RS02195 at 442.592 kb on + strand, within ABID97_RS02195 at 442.593 kb on - strand, within ABID97_RS02195 at 442.627 kb on + strand, within ABID97_RS02195 at 442.627 kb on + strand, within ABID97_RS02195 at 442.627 kb on + strand, within ABID97_RS02195 at 442.628 kb on - strand, within ABID97_RS02195 at 442.628 kb on - strand, within ABID97_RS02195 at 442.628 kb on - strand, within ABID97_RS02195 at 442.642 kb on - strand, within ABID97_RS02195 at 442.642 kb on - strand, within ABID97_RS02195 at 442.642 kb on - strand, within ABID97_RS02195 at 442.695 kb on + strand, within ABID97_RS02195 at 442.695 kb on + strand, within ABID97_RS02195 at 442.696 kb on - strand, within ABID97_RS02195 at 442.696 kb on - strand, within ABID97_RS02195 at 442.696 kb on - strand, within ABID97_RS02195 at 442.696 kb on - strand, within ABID97_RS02195 at 442.696 kb on - strand, within ABID97_RS02195 at 442.716 kb on + strand, within ABID97_RS02195 at 442.716 kb on + strand, within ABID97_RS02195 at 442.716 kb on + strand, within ABID97_RS02195 at 442.716 kb on + strand, within ABID97_RS02195 at 442.725 kb on + strand, within ABID97_RS02195 at 442.725 kb on + strand, within ABID97_RS02195 at 442.725 kb on + strand, within ABID97_RS02195 at 442.725 kb on + strand, within ABID97_RS02195 at 442.725 kb on + strand, within ABID97_RS02195 at 442.725 kb on + strand, within ABID97_RS02195 at 442.725 kb on + strand, within ABID97_RS02195 at 442.726 kb on - strand, within ABID97_RS02195 at 442.726 kb on - strand, within ABID97_RS02195 at 442.726 kb on - strand, within ABID97_RS02195 at 442.726 kb on - strand, within ABID97_RS02195 at 442.726 kb on - strand, within ABID97_RS02195 at 442.728 kb on + strand, within ABID97_RS02195 at 442.729 kb on - strand, within ABID97_RS02195 at 442.833 kb on - strand, within ABID97_RS02195 at 442.864 kb on + strand, within ABID97_RS02195 at 442.892 kb on - strand, within ABID97_RS02195 at 442.930 kb on + strand, within ABID97_RS02195 at 442.930 kb on + strand, within ABID97_RS02195 at 442.941 kb on + strand, within ABID97_RS02195 at 442.941 kb on + strand at 442.941 kb on + strand, within ABID97_RS02195 at 442.942 kb on - strand, within ABID97_RS02195 at 442.942 kb on - strand, within ABID97_RS02195 at 442.942 kb on - strand, within ABID97_RS02195 at 443.039 kb on - strand, within ABID97_RS02195 at 443.074 kb on + strand, within ABID97_RS02195 at 443.075 kb on - strand, within ABID97_RS02195 at 443.177 kb on + strand, within ABID97_RS02195 at 443.178 kb on - strand, within ABID97_RS02195 at 443.178 kb on - strand at 443.184 kb on - strand, within ABID97_RS02195 at 443.184 kb on - strand, within ABID97_RS02195 at 443.185 kb on + strand, within ABID97_RS02195 at 443.185 kb on + strand, within ABID97_RS02195 at 443.186 kb on - strand, within ABID97_RS02195 at 443.186 kb on - strand, within ABID97_RS02195 at 443.273 kb on - strand, within ABID97_RS02195 at 443.277 kb on - strand, within ABID97_RS02195 at 443.277 kb on - strand, within ABID97_RS02195 at 443.281 kb on + strand, within ABID97_RS02195 at 443.396 kb on + strand at 443.396 kb on + strand at 443.396 kb on + strand at 443.436 kb on - strand at 443.481 kb on + strand at 443.482 kb on - strand at 443.534 kb on - strand at 443.561 kb on - strand at 443.575 kb on - strand at 443.618 kb on - strand at 443.808 kb on + strand, within ABID97_RS02200 at 443.808 kb on + strand, within ABID97_RS02200 at 443.809 kb on - strand, within ABID97_RS02200 at 443.869 kb on - strand, within ABID97_RS02200 at 443.946 kb on + strand, within ABID97_RS02200 at 443.958 kb on + strand, within ABID97_RS02200 at 443.959 kb on - strand, within ABID97_RS02200 at 444.043 kb on + strand, within ABID97_RS02200 at 444.044 kb on - strand, within ABID97_RS02200 at 444.044 kb on - strand, within ABID97_RS02200 at 444.044 kb on - strand, within ABID97_RS02200 at 444.044 kb on - strand, within ABID97_RS02200 at 444.197 kb on - strand, within ABID97_RS02200 at 444.244 kb on - strand, within ABID97_RS02200 at 444.333 kb on - strand, within ABID97_RS02200 at 444.383 kb on + strand, within ABID97_RS02200 at 444.423 kb on + strand, within ABID97_RS02200 at 444.424 kb on - strand, within ABID97_RS02200 at 444.431 kb on - strand, within ABID97_RS02200 at 444.431 kb on - strand, within ABID97_RS02200 at 444.442 kb on - strand, within ABID97_RS02200
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 441,407 + ABID97_RS02190 0.15 +3.1 441,408 - ABID97_RS02190 0.15 +1.5 441,408 - ABID97_RS02190 0.15 +2.2 441,408 - ABID97_RS02190 0.15 +2.4 441,479 + ABID97_RS02190 0.22 +1.6 441,479 + ABID97_RS02190 0.22 +2.2 441,480 - ABID97_RS02190 0.22 +2.6 441,560 + ABID97_RS02190 0.31 +1.9 441,561 - ABID97_RS02190 0.31 +2.6 441,596 + ABID97_RS02190 0.34 +2.0 441,596 + ABID97_RS02190 0.34 +2.2 441,596 + ABID97_RS02190 0.34 +2.4 441,597 - ABID97_RS02190 0.34 +2.5 441,597 - ABID97_RS02190 0.34 +1.8 441,740 + ABID97_RS02190 0.49 +2.2 441,740 + ABID97_RS02190 0.49 +2.7 441,740 + ABID97_RS02190 0.49 +2.1 441,741 - ABID97_RS02190 0.50 +3.3 441,741 - ABID97_RS02190 0.50 +2.4 441,741 - ABID97_RS02190 0.50 +2.4 441,995 + ABID97_RS02190 0.76 +3.1 441,995 + ABID97_RS02190 0.76 +1.6 441,996 - ABID97_RS02190 0.76 +2.0 441,996 - ABID97_RS02190 0.76 +2.2 442,008 + ABID97_RS02190 0.78 +2.2 442,008 + ABID97_RS02190 0.78 +2.2 442,009 - ABID97_RS02190 0.78 +1.8 442,043 + ABID97_RS02190 0.81 +2.4 442,043 + ABID97_RS02190 0.81 +1.8 442,043 + ABID97_RS02190 0.81 +0.9 442,044 - ABID97_RS02190 0.81 +1.6 442,044 - ABID97_RS02190 0.81 +3.3 442,044 - ABID97_RS02190 0.81 +2.0 442,121 + ABID97_RS02190 0.89 +2.2 442,121 + ABID97_RS02190 0.89 +2.7 442,122 - ABID97_RS02190 0.90 +1.9 442,182 - +2.6 442,278 + +2.1 442,324 - +1.8 442,363 + ABID97_RS02195 0.10 +2.1 442,364 - ABID97_RS02195 0.10 +2.1 442,392 - ABID97_RS02195 0.13 +1.1 442,432 - ABID97_RS02195 0.16 +1.3 442,592 + ABID97_RS02195 0.28 +2.2 442,592 + ABID97_RS02195 0.28 +1.9 442,592 + ABID97_RS02195 0.28 +3.2 442,593 - ABID97_RS02195 0.28 +2.7 442,627 + ABID97_RS02195 0.31 +2.2 442,627 + ABID97_RS02195 0.31 +5.2 442,627 + ABID97_RS02195 0.31 +1.3 442,628 - ABID97_RS02195 0.31 +0.8 442,628 - ABID97_RS02195 0.31 +1.8 442,628 - ABID97_RS02195 0.31 +2.2 442,642 - ABID97_RS02195 0.32 +2.5 442,642 - ABID97_RS02195 0.32 +3.3 442,642 - ABID97_RS02195 0.32 +3.0 442,695 + ABID97_RS02195 0.36 +2.6 442,695 + ABID97_RS02195 0.36 +2.6 442,696 - ABID97_RS02195 0.36 +2.5 442,696 - ABID97_RS02195 0.36 +2.4 442,696 - ABID97_RS02195 0.36 +3.2 442,696 - ABID97_RS02195 0.36 +2.7 442,696 - ABID97_RS02195 0.36 +1.9 442,716 + ABID97_RS02195 0.38 +2.6 442,716 + ABID97_RS02195 0.38 +1.5 442,716 + ABID97_RS02195 0.38 +2.8 442,716 + ABID97_RS02195 0.38 +2.6 442,725 + ABID97_RS02195 0.39 +1.8 442,725 + ABID97_RS02195 0.39 +1.1 442,725 + ABID97_RS02195 0.39 +2.6 442,725 + ABID97_RS02195 0.39 +1.9 442,725 + ABID97_RS02195 0.39 +1.6 442,725 + ABID97_RS02195 0.39 +1.6 442,725 + ABID97_RS02195 0.39 +1.6 442,726 - ABID97_RS02195 0.39 +2.2 442,726 - ABID97_RS02195 0.39 +0.5 442,726 - ABID97_RS02195 0.39 +2.2 442,726 - ABID97_RS02195 0.39 +2.1 442,726 - ABID97_RS02195 0.39 +2.5 442,728 + ABID97_RS02195 0.39 +2.0 442,729 - ABID97_RS02195 0.39 +2.4 442,833 - ABID97_RS02195 0.47 +1.5 442,864 + ABID97_RS02195 0.49 +2.9 442,892 - ABID97_RS02195 0.52 +1.2 442,930 + ABID97_RS02195 0.54 +2.4 442,930 + ABID97_RS02195 0.54 +2.6 442,941 + ABID97_RS02195 0.55 +2.1 442,941 + +2.2 442,941 + ABID97_RS02195 0.55 +2.3 442,942 - ABID97_RS02195 0.55 +2.4 442,942 - ABID97_RS02195 0.55 +2.6 442,942 - ABID97_RS02195 0.55 +2.1 443,039 - ABID97_RS02195 0.63 +2.7 443,074 + ABID97_RS02195 0.66 +2.2 443,075 - ABID97_RS02195 0.66 +2.4 443,177 + ABID97_RS02195 0.74 +1.5 443,178 - ABID97_RS02195 0.74 +2.6 443,178 - +0.8 443,184 - ABID97_RS02195 0.74 +1.7 443,184 - ABID97_RS02195 0.74 +2.2 443,185 + ABID97_RS02195 0.74 +1.5 443,185 + ABID97_RS02195 0.74 +3.0 443,186 - ABID97_RS02195 0.74 +2.6 443,186 - ABID97_RS02195 0.74 +2.6 443,273 - ABID97_RS02195 0.81 +2.1 443,277 - ABID97_RS02195 0.81 +2.3 443,277 - ABID97_RS02195 0.81 +2.3 443,281 + ABID97_RS02195 0.82 +1.9 443,396 + +2.7 443,396 + +1.0 443,396 + +1.8 443,436 - +2.5 443,481 + +3.1 443,482 - +2.5 443,534 - -0.3 443,561 - +0.7 443,575 - +0.4 443,618 - +1.8 443,808 + ABID97_RS02200 0.15 +1.6 443,808 + ABID97_RS02200 0.15 +0.3 443,809 - ABID97_RS02200 0.15 +0.8 443,869 - ABID97_RS02200 0.18 +1.0 443,946 + ABID97_RS02200 0.22 +0.9 443,958 + ABID97_RS02200 0.23 +0.8 443,959 - ABID97_RS02200 0.23 +0.7 444,043 + ABID97_RS02200 0.27 +1.4 444,044 - ABID97_RS02200 0.27 +0.4 444,044 - ABID97_RS02200 0.27 -0.1 444,044 - ABID97_RS02200 0.27 +0.9 444,044 - ABID97_RS02200 0.27 +1.4 444,197 - ABID97_RS02200 0.35 +1.1 444,244 - ABID97_RS02200 0.38 -1.5 444,333 - ABID97_RS02200 0.42 +0.9 444,383 + ABID97_RS02200 0.45 +1.5 444,423 + ABID97_RS02200 0.47 +1.3 444,424 - ABID97_RS02200 0.47 -0.2 444,431 - ABID97_RS02200 0.47 +1.3 444,431 - ABID97_RS02200 0.47 +0.7 444,442 - ABID97_RS02200 0.48 +1.2
Or see this region's nucleotide sequence