Experiment: phage_S63 10 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29085 and ABID97_RS29090 are separated by 5 nucleotides ABID97_RS29090 and ABID97_RS29095 overlap by 8 nucleotides ABID97_RS29095 and ABID97_RS29100 are separated by 323 nucleotides ABID97_RS29100 and ABID97_RS29105 are separated by 127 nucleotides
ABID97_RS29085: ABID97_RS29085 - amidohydrolase, at 735,211 to 737,103
_RS29085
ABID97_RS29090: ABID97_RS29090 - DoxX family protein, at 737,109 to 737,504
_RS29090
ABID97_RS29095: ABID97_RS29095 - MFS transporter, at 737,497 to 739,098
_RS29095
ABID97_RS29100: ABID97_RS29100 - GreA/GreB family elongation factor, at 739,422 to 739,823
_RS29100
ABID97_RS29105: ABID97_RS29105 - universal stress protein, at 739,951 to 740,916
_RS29105
Position (kb) 737
738
739
740 Strain fitness (log2 ratio) -1
0
1
2 at 736.550 kb on - strand, within ABID97_RS29085 at 737.169 kb on + strand, within ABID97_RS29090 at 737.492 kb on + strand at 737.492 kb on + strand at 738.046 kb on + strand, within ABID97_RS29095 at 738.046 kb on + strand, within ABID97_RS29095 at 738.046 kb on + strand, within ABID97_RS29095 at 738.047 kb on - strand, within ABID97_RS29095 at 738.067 kb on + strand, within ABID97_RS29095 at 738.067 kb on + strand, within ABID97_RS29095 at 738.068 kb on - strand at 738.068 kb on - strand, within ABID97_RS29095 at 738.575 kb on - strand, within ABID97_RS29095 at 738.575 kb on - strand, within ABID97_RS29095 at 738.820 kb on + strand, within ABID97_RS29095 at 739.175 kb on + strand at 739.176 kb on - strand at 739.176 kb on - strand at 739.641 kb on + strand, within ABID97_RS29100
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 10 MOI remove 736,550 - ABID97_RS29085 0.71 +0.0 737,169 + ABID97_RS29090 0.15 -1.3 737,492 + -0.7 737,492 + +1.2 738,046 + ABID97_RS29095 0.34 +0.1 738,046 + ABID97_RS29095 0.34 -0.3 738,046 + ABID97_RS29095 0.34 -0.2 738,047 - ABID97_RS29095 0.34 -1.6 738,067 + ABID97_RS29095 0.36 -0.7 738,067 + ABID97_RS29095 0.36 -0.2 738,068 - -0.1 738,068 - ABID97_RS29095 0.36 -0.9 738,575 - ABID97_RS29095 0.67 -0.6 738,575 - ABID97_RS29095 0.67 +0.1 738,820 + ABID97_RS29095 0.83 +2.1 739,175 + -0.2 739,176 - +0.3 739,176 - -1.6 739,641 + ABID97_RS29100 0.54 -0.6
Or see this region's nucleotide sequence