Experiment: phage_S63 10 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24555 and ABID97_RS24560 overlap by 14 nucleotides ABID97_RS24560 and ABID97_RS24565 are separated by 9 nucleotides ABID97_RS24565 and ABID97_RS24570 are separated by 225 nucleotides
ABID97_RS24555: ABID97_RS24555 - ABC transporter ATP-binding protein, at 5,081,899 to 5,082,630
_RS24555
ABID97_RS24560: ABID97_RS24560 - ABC transporter ATP-binding protein, at 5,082,617 to 5,083,360
_RS24560
ABID97_RS24565: ABID97_RS24565 - ABC transporter substrate-binding protein, at 5,083,370 to 5,084,728
_RS24565
ABID97_RS24570: ABID97_RS24570 - helix-turn-helix domain-containing protein, at 5,084,954 to 5,085,934
_RS24570
Position (kb) 5083
5084
5085 Strain fitness (log2 ratio) -1
0
1
2 at 5082.599 kb on + strand at 5082.599 kb on + strand at 5082.600 kb on - strand at 5082.603 kb on - strand at 5082.664 kb on - strand at 5082.664 kb on - strand at 5082.664 kb on - strand at 5083.695 kb on + strand, within ABID97_RS24565 at 5083.695 kb on + strand, within ABID97_RS24565 at 5083.695 kb on + strand, within ABID97_RS24565 at 5083.696 kb on - strand, within ABID97_RS24565 at 5083.960 kb on - strand, within ABID97_RS24565 at 5084.013 kb on + strand, within ABID97_RS24565 at 5084.139 kb on + strand, within ABID97_RS24565 at 5084.415 kb on + strand, within ABID97_RS24565 at 5084.416 kb on - strand, within ABID97_RS24565 at 5084.526 kb on + strand, within ABID97_RS24565 at 5084.527 kb on - strand, within ABID97_RS24565 at 5084.649 kb on + strand at 5084.804 kb on + strand at 5084.832 kb on + strand at 5085.311 kb on + strand, within ABID97_RS24570 at 5085.312 kb on - strand, within ABID97_RS24570 at 5085.698 kb on + strand, within ABID97_RS24570 at 5085.699 kb on - strand, within ABID97_RS24570
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 10 MOI remove 5,082,599 + +2.6 5,082,599 + -0.1 5,082,600 - -0.4 5,082,603 - +1.0 5,082,664 - -0.5 5,082,664 - +0.3 5,082,664 - +1.2 5,083,695 + ABID97_RS24565 0.24 +0.2 5,083,695 + ABID97_RS24565 0.24 -0.1 5,083,695 + ABID97_RS24565 0.24 +1.4 5,083,696 - ABID97_RS24565 0.24 +0.4 5,083,960 - ABID97_RS24565 0.43 +1.5 5,084,013 + ABID97_RS24565 0.47 -0.1 5,084,139 + ABID97_RS24565 0.57 +0.6 5,084,415 + ABID97_RS24565 0.77 +1.1 5,084,416 - ABID97_RS24565 0.77 -0.4 5,084,526 + ABID97_RS24565 0.85 -0.1 5,084,527 - ABID97_RS24565 0.85 +0.0 5,084,649 + -0.6 5,084,804 + -0.5 5,084,832 + +1.6 5,085,311 + ABID97_RS24570 0.36 -0.6 5,085,312 - ABID97_RS24570 0.36 -0.3 5,085,698 + ABID97_RS24570 0.76 -0.2 5,085,699 - ABID97_RS24570 0.76 -0.0
Or see this region's nucleotide sequence