Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08130

Experiment: phage_S63 10 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08120 and ABID97_RS08125 are separated by 13 nucleotidesABID97_RS08125 and ABID97_RS08130 are separated by 48 nucleotidesABID97_RS08130 and ABID97_RS08135 are separated by 210 nucleotides ABID97_RS08120: ABID97_RS08120 - hypothetical protein, at 1,702,707 to 1,703,204 _RS08120 ABID97_RS08125: ABID97_RS08125 - ribonuclease HI family protein, at 1,703,218 to 1,703,661 _RS08125 ABID97_RS08130: ABID97_RS08130 - DUF3297 family protein, at 1,703,710 to 1,703,958 _RS08130 ABID97_RS08135: ABID97_RS08135 - pectate lyase, at 1,704,169 to 1,705,983 _RS08135 Position (kb) 1703 1704Strain fitness (log2 ratio) -1 0 1 2at 1702.754 kb on - strandat 1702.939 kb on - strand, within ABID97_RS08120at 1703.061 kb on + strand, within ABID97_RS08120at 1703.061 kb on + strand, within ABID97_RS08120at 1703.082 kb on + strand, within ABID97_RS08120at 1703.083 kb on - strand, within ABID97_RS08120at 1703.083 kb on - strand, within ABID97_RS08120at 1703.083 kb on - strand, within ABID97_RS08120at 1703.085 kb on + strand, within ABID97_RS08120at 1703.242 kb on + strandat 1703.242 kb on + strandat 1703.434 kb on + strand, within ABID97_RS08125at 1703.435 kb on - strand, within ABID97_RS08125at 1703.581 kb on + strand, within ABID97_RS08125at 1703.581 kb on + strand, within ABID97_RS08125at 1703.581 kb on + strand, within ABID97_RS08125at 1703.698 kb on - strandat 1703.698 kb on - strandat 1703.698 kb on - strandat 1703.698 kb on - strandat 1703.848 kb on + strand, within ABID97_RS08130at 1703.950 kb on + strandat 1704.394 kb on + strand, within ABID97_RS08135at 1704.502 kb on + strand, within ABID97_RS08135at 1704.529 kb on + strand, within ABID97_RS08135at 1704.529 kb on + strand, within ABID97_RS08135at 1704.595 kb on + strand, within ABID97_RS08135at 1704.595 kb on + strand, within ABID97_RS08135at 1704.595 kb on + strand, within ABID97_RS08135at 1704.595 kb on + strand, within ABID97_RS08135at 1704.595 kb on + strand, within ABID97_RS08135at 1704.596 kb on - strand, within ABID97_RS08135at 1704.596 kb on - strand, within ABID97_RS08135at 1704.685 kb on + strand, within ABID97_RS08135at 1704.686 kb on - strand, within ABID97_RS08135at 1704.686 kb on - strand, within ABID97_RS08135at 1704.686 kb on - strand, within ABID97_RS08135at 1704.686 kb on - strand, within ABID97_RS08135at 1704.689 kb on - strand, within ABID97_RS08135at 1704.689 kb on - strand, within ABID97_RS08135at 1704.752 kb on - strand, within ABID97_RS08135at 1704.752 kb on - strand, within ABID97_RS08135at 1704.955 kb on + strand, within ABID97_RS08135

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_S63 10 MOI
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1,702,754 - +0.8
1,702,939 - ABID97_RS08120 0.47 -0.1
1,703,061 + ABID97_RS08120 0.71 -0.5
1,703,061 + ABID97_RS08120 0.71 -1.0
1,703,082 + ABID97_RS08120 0.75 -0.2
1,703,083 - ABID97_RS08120 0.76 +0.1
1,703,083 - ABID97_RS08120 0.76 -0.4
1,703,083 - ABID97_RS08120 0.76 +0.1
1,703,085 + ABID97_RS08120 0.76 +0.4
1,703,242 + +0.2
1,703,242 + +0.1
1,703,434 + ABID97_RS08125 0.49 +0.3
1,703,435 - ABID97_RS08125 0.49 +2.1
1,703,581 + ABID97_RS08125 0.82 +0.0
1,703,581 + ABID97_RS08125 0.82 +0.8
1,703,581 + ABID97_RS08125 0.82 -1.1
1,703,698 - +0.8
1,703,698 - +0.8
1,703,698 - -0.2
1,703,698 - -1.2
1,703,848 + ABID97_RS08130 0.55 +1.3
1,703,950 + +0.5
1,704,394 + ABID97_RS08135 0.12 -0.6
1,704,502 + ABID97_RS08135 0.18 +0.8
1,704,529 + ABID97_RS08135 0.20 +0.2
1,704,529 + ABID97_RS08135 0.20 -0.7
1,704,595 + ABID97_RS08135 0.23 +0.1
1,704,595 + ABID97_RS08135 0.23 -1.3
1,704,595 + ABID97_RS08135 0.23 -0.2
1,704,595 + ABID97_RS08135 0.23 -0.3
1,704,595 + ABID97_RS08135 0.23 +0.5
1,704,596 - ABID97_RS08135 0.24 -0.4
1,704,596 - ABID97_RS08135 0.24 -0.1
1,704,685 + ABID97_RS08135 0.28 +1.1
1,704,686 - ABID97_RS08135 0.28 -1.2
1,704,686 - ABID97_RS08135 0.28 -0.2
1,704,686 - ABID97_RS08135 0.28 +1.0
1,704,686 - ABID97_RS08135 0.28 +0.9
1,704,689 - ABID97_RS08135 0.29 -0.6
1,704,689 - ABID97_RS08135 0.29 -0.9
1,704,752 - ABID97_RS08135 0.32 +0.6
1,704,752 - ABID97_RS08135 0.32 +1.5
1,704,955 + ABID97_RS08135 0.43 -0.0

Or see this region's nucleotide sequence