Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07495

Experiment: phage_S63 10 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07490 and ABID97_RS07495 are separated by 316 nucleotidesABID97_RS07495 and ABID97_RS07500 are separated by 146 nucleotides ABID97_RS07490: ABID97_RS07490 - YceH family protein, at 1,580,916 to 1,581,602 _RS07490 ABID97_RS07495: ABID97_RS07495 - patatin-like phospholipase family protein, at 1,581,919 to 1,583,112 _RS07495 ABID97_RS07500: ABID97_RS07500 - iron-sulfur cluster carrier protein ApbC, at 1,583,259 to 1,584,350 _RS07500 Position (kb) 1581 1582 1583 1584Strain fitness (log2 ratio) -1 0 1 2at 1581.003 kb on + strand, within ABID97_RS07490at 1581.004 kb on - strand, within ABID97_RS07490at 1581.595 kb on + strandat 1581.702 kb on - strandat 1581.702 kb on - strandat 1581.704 kb on + strandat 1581.704 kb on + strandat 1581.705 kb on - strandat 1581.705 kb on - strandat 1581.705 kb on - strandat 1581.705 kb on - strandat 1581.705 kb on - strandat 1581.806 kb on + strandat 1581.806 kb on + strandat 1581.806 kb on + strandat 1581.807 kb on - strandat 1581.807 kb on - strandat 1581.807 kb on - strandat 1581.807 kb on - strandat 1581.807 kb on - strandat 1581.837 kb on - strandat 1582.032 kb on - strandat 1582.032 kb on - strandat 1582.185 kb on + strand, within ABID97_RS07495at 1582.328 kb on + strand, within ABID97_RS07495at 1582.329 kb on - strand, within ABID97_RS07495at 1582.329 kb on - strand, within ABID97_RS07495at 1582.457 kb on + strand, within ABID97_RS07495at 1582.457 kb on + strand, within ABID97_RS07495at 1582.458 kb on - strand, within ABID97_RS07495at 1582.464 kb on + strand, within ABID97_RS07495at 1582.465 kb on - strand, within ABID97_RS07495at 1582.465 kb on - strand, within ABID97_RS07495at 1582.631 kb on + strand, within ABID97_RS07495at 1582.632 kb on - strand, within ABID97_RS07495at 1582.632 kb on - strand, within ABID97_RS07495at 1582.632 kb on - strand, within ABID97_RS07495at 1582.850 kb on + strand, within ABID97_RS07495at 1583.670 kb on + strand, within ABID97_RS07500at 1583.670 kb on + strand, within ABID97_RS07500at 1583.670 kb on + strand, within ABID97_RS07500at 1583.880 kb on + strand, within ABID97_RS07500at 1583.881 kb on - strand, within ABID97_RS07500

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_S63 10 MOI
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1,581,003 + ABID97_RS07490 0.13 -0.1
1,581,004 - ABID97_RS07490 0.13 -1.6
1,581,595 + +0.3
1,581,702 - +0.8
1,581,702 - +1.1
1,581,704 + -0.9
1,581,704 + +1.0
1,581,705 - +0.3
1,581,705 - -0.6
1,581,705 - +1.1
1,581,705 - -0.1
1,581,705 - -0.4
1,581,806 + +0.4
1,581,806 + -0.4
1,581,806 + +0.4
1,581,807 - -0.2
1,581,807 - -0.8
1,581,807 - -0.4
1,581,807 - +1.1
1,581,807 - +1.1
1,581,837 - +0.1
1,582,032 - -0.4
1,582,032 - +0.1
1,582,185 + ABID97_RS07495 0.22 -0.2
1,582,328 + ABID97_RS07495 0.34 -0.3
1,582,329 - ABID97_RS07495 0.34 +0.3
1,582,329 - ABID97_RS07495 0.34 -0.2
1,582,457 + ABID97_RS07495 0.45 +1.1
1,582,457 + ABID97_RS07495 0.45 +0.5
1,582,458 - ABID97_RS07495 0.45 -1.0
1,582,464 + ABID97_RS07495 0.46 -0.0
1,582,465 - ABID97_RS07495 0.46 +2.6
1,582,465 - ABID97_RS07495 0.46 +1.2
1,582,631 + ABID97_RS07495 0.60 +0.2
1,582,632 - ABID97_RS07495 0.60 +0.1
1,582,632 - ABID97_RS07495 0.60 -0.5
1,582,632 - ABID97_RS07495 0.60 -1.2
1,582,850 + ABID97_RS07495 0.78 -0.7
1,583,670 + ABID97_RS07500 0.38 +1.1
1,583,670 + ABID97_RS07500 0.38 +0.6
1,583,670 + ABID97_RS07500 0.38 +2.1
1,583,880 + ABID97_RS07500 0.57 +1.1
1,583,881 - ABID97_RS07500 0.57 +2.1

Or see this region's nucleotide sequence