Experiment: phage_S63 10 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07490 and ABID97_RS07495 are separated by 316 nucleotides ABID97_RS07495 and ABID97_RS07500 are separated by 146 nucleotides
ABID97_RS07490: ABID97_RS07490 - YceH family protein, at 1,580,916 to 1,581,602
_RS07490
ABID97_RS07495: ABID97_RS07495 - patatin-like phospholipase family protein, at 1,581,919 to 1,583,112
_RS07495
ABID97_RS07500: ABID97_RS07500 - iron-sulfur cluster carrier protein ApbC, at 1,583,259 to 1,584,350
_RS07500
Position (kb)
1581
1582
1583
1584 Strain fitness (log2 ratio)
-1
0
1
2 at 1581.003 kb on + strand, within ABID97_RS07490 at 1581.004 kb on - strand, within ABID97_RS07490 at 1581.595 kb on + strand at 1581.702 kb on - strand at 1581.702 kb on - strand at 1581.704 kb on + strand at 1581.704 kb on + strand at 1581.705 kb on - strand at 1581.705 kb on - strand at 1581.705 kb on - strand at 1581.705 kb on - strand at 1581.705 kb on - strand at 1581.806 kb on + strand at 1581.806 kb on + strand at 1581.806 kb on + strand at 1581.807 kb on - strand at 1581.807 kb on - strand at 1581.807 kb on - strand at 1581.807 kb on - strand at 1581.807 kb on - strand at 1581.837 kb on - strand at 1582.032 kb on - strand at 1582.032 kb on - strand at 1582.185 kb on + strand, within ABID97_RS07495 at 1582.328 kb on + strand, within ABID97_RS07495 at 1582.329 kb on - strand, within ABID97_RS07495 at 1582.329 kb on - strand, within ABID97_RS07495 at 1582.457 kb on + strand, within ABID97_RS07495 at 1582.457 kb on + strand, within ABID97_RS07495 at 1582.458 kb on - strand, within ABID97_RS07495 at 1582.464 kb on + strand, within ABID97_RS07495 at 1582.465 kb on - strand, within ABID97_RS07495 at 1582.465 kb on - strand, within ABID97_RS07495 at 1582.631 kb on + strand, within ABID97_RS07495 at 1582.632 kb on - strand, within ABID97_RS07495 at 1582.632 kb on - strand, within ABID97_RS07495 at 1582.632 kb on - strand, within ABID97_RS07495 at 1582.850 kb on + strand, within ABID97_RS07495 at 1583.670 kb on + strand, within ABID97_RS07500 at 1583.670 kb on + strand, within ABID97_RS07500 at 1583.670 kb on + strand, within ABID97_RS07500 at 1583.880 kb on + strand, within ABID97_RS07500 at 1583.881 kb on - strand, within ABID97_RS07500
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 10 MOI remove 1,581,003 + ABID97_RS07490 0.13 -0.1 1,581,004 - ABID97_RS07490 0.13 -1.6 1,581,595 + +0.3 1,581,702 - +0.8 1,581,702 - +1.1 1,581,704 + -0.9 1,581,704 + +1.0 1,581,705 - +0.3 1,581,705 - -0.6 1,581,705 - +1.1 1,581,705 - -0.1 1,581,705 - -0.4 1,581,806 + +0.4 1,581,806 + -0.4 1,581,806 + +0.4 1,581,807 - -0.2 1,581,807 - -0.8 1,581,807 - -0.4 1,581,807 - +1.1 1,581,807 - +1.1 1,581,837 - +0.1 1,582,032 - -0.4 1,582,032 - +0.1 1,582,185 + ABID97_RS07495 0.22 -0.2 1,582,328 + ABID97_RS07495 0.34 -0.3 1,582,329 - ABID97_RS07495 0.34 +0.3 1,582,329 - ABID97_RS07495 0.34 -0.2 1,582,457 + ABID97_RS07495 0.45 +1.1 1,582,457 + ABID97_RS07495 0.45 +0.5 1,582,458 - ABID97_RS07495 0.45 -1.0 1,582,464 + ABID97_RS07495 0.46 -0.0 1,582,465 - ABID97_RS07495 0.46 +2.6 1,582,465 - ABID97_RS07495 0.46 +1.2 1,582,631 + ABID97_RS07495 0.60 +0.2 1,582,632 - ABID97_RS07495 0.60 +0.1 1,582,632 - ABID97_RS07495 0.60 -0.5 1,582,632 - ABID97_RS07495 0.60 -1.2 1,582,850 + ABID97_RS07495 0.78 -0.7 1,583,670 + ABID97_RS07500 0.38 +1.1 1,583,670 + ABID97_RS07500 0.38 +0.6 1,583,670 + ABID97_RS07500 0.38 +2.1 1,583,880 + ABID97_RS07500 0.57 +1.1 1,583,881 - ABID97_RS07500 0.57 +2.1
Or see this region's nucleotide sequence