Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02185

Experiment: phage_S63 10 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02180 and ABID97_RS02185 are separated by 11 nucleotidesABID97_RS02185 and ABID97_RS02190 overlap by 4 nucleotidesABID97_RS02190 and ABID97_RS02195 are separated by 7 nucleotides ABID97_RS02180: ABID97_RS02180 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 439,572 to 440,678 _RS02180 ABID97_RS02185: ABID97_RS02185 - DapH/DapD/GlmU-related protein, at 440,690 to 441,271 _RS02185 ABID97_RS02190: ABID97_RS02190 - Gfo/Idh/MocA family oxidoreductase, at 441,268 to 442,221 _RS02190 ABID97_RS02195: ABID97_RS02195 - nucleotide sugar dehydrogenase, at 442,229 to 443,515 _RS02195 Position (kb) 440 441 442Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 439.723 kb on + strand, within ABID97_RS02180at 439.724 kb on - strand, within ABID97_RS02180at 439.753 kb on + strand, within ABID97_RS02180at 439.784 kb on + strand, within ABID97_RS02180at 439.784 kb on + strand, within ABID97_RS02180at 439.785 kb on - strand, within ABID97_RS02180at 439.785 kb on - strand, within ABID97_RS02180at 439.826 kb on + strand, within ABID97_RS02180at 439.826 kb on + strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.827 kb on - strand, within ABID97_RS02180at 439.829 kb on - strand, within ABID97_RS02180at 439.829 kb on - strand, within ABID97_RS02180at 439.829 kb on - strand, within ABID97_RS02180at 439.906 kb on + strand, within ABID97_RS02180at 439.914 kb on - strand, within ABID97_RS02180at 439.914 kb on - strand, within ABID97_RS02180at 439.972 kb on - strand, within ABID97_RS02180at 440.018 kb on + strand, within ABID97_RS02180at 440.018 kb on + strand, within ABID97_RS02180at 440.018 kb on + strand, within ABID97_RS02180at 440.018 kb on + strand, within ABID97_RS02180at 440.018 kb on + strand, within ABID97_RS02180at 440.022 kb on + strand, within ABID97_RS02180at 440.022 kb on + strand, within ABID97_RS02180at 440.022 kb on + strand, within ABID97_RS02180at 440.022 kb on + strand, within ABID97_RS02180at 440.022 kb on + strand, within ABID97_RS02180at 440.022 kb on + strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.023 kb on - strand, within ABID97_RS02180at 440.026 kb on + strand, within ABID97_RS02180at 440.027 kb on - strand, within ABID97_RS02180at 440.027 kb on - strand, within ABID97_RS02180at 440.052 kb on + strand, within ABID97_RS02180at 440.114 kb on - strand, within ABID97_RS02180at 440.188 kb on + strand, within ABID97_RS02180at 440.188 kb on + strand, within ABID97_RS02180at 440.188 kb on + strand, within ABID97_RS02180at 440.188 kb on + strand, within ABID97_RS02180at 440.189 kb on - strand, within ABID97_RS02180at 440.189 kb on - strand, within ABID97_RS02180at 440.189 kb on - strand, within ABID97_RS02180at 440.189 kb on - strandat 440.189 kb on - strand, within ABID97_RS02180at 440.189 kb on - strand, within ABID97_RS02180at 440.390 kb on + strand, within ABID97_RS02180at 440.391 kb on - strand, within ABID97_RS02180at 440.391 kb on - strand, within ABID97_RS02180at 440.397 kb on + strand, within ABID97_RS02180at 440.398 kb on - strand, within ABID97_RS02180at 440.398 kb on - strand, within ABID97_RS02180at 440.398 kb on - strand, within ABID97_RS02180at 440.398 kb on - strand, within ABID97_RS02180at 440.398 kb on - strand, within ABID97_RS02180at 440.590 kb on + strandat 440.590 kb on + strandat 440.590 kb on + strandat 440.590 kb on + strandat 440.590 kb on + strandat 440.591 kb on - strandat 440.591 kb on - strandat 440.591 kb on - strandat 440.591 kb on - strandat 440.591 kb on - strandat 440.591 kb on - strandat 440.591 kb on - strandat 440.591 kb on - strandat 440.591 kb on - strandat 440.739 kb on + strandat 440.739 kb on + strandat 440.739 kb on + strandat 440.739 kb on + strandat 440.739 kb on + strandat 440.740 kb on - strandat 440.908 kb on + strand, within ABID97_RS02185at 440.909 kb on - strand, within ABID97_RS02185at 440.921 kb on + strand, within ABID97_RS02185at 440.921 kb on + strand, within ABID97_RS02185at 440.976 kb on + strand, within ABID97_RS02185at 441.012 kb on + strand, within ABID97_RS02185at 441.012 kb on + strand, within ABID97_RS02185at 441.012 kb on + strand, within ABID97_RS02185at 441.012 kb on + strand, within ABID97_RS02185at 441.012 kb on + strand, within ABID97_RS02185at 441.013 kb on - strand, within ABID97_RS02185at 441.013 kb on - strand, within ABID97_RS02185at 441.013 kb on - strand, within ABID97_RS02185at 441.013 kb on - strand, within ABID97_RS02185at 441.013 kb on - strand, within ABID97_RS02185at 441.075 kb on + strand, within ABID97_RS02185at 441.075 kb on + strand, within ABID97_RS02185at 441.075 kb on + strand, within ABID97_RS02185at 441.076 kb on - strand, within ABID97_RS02185at 441.407 kb on + strand, within ABID97_RS02190at 441.408 kb on - strand, within ABID97_RS02190at 441.408 kb on - strand, within ABID97_RS02190at 441.408 kb on - strand, within ABID97_RS02190at 441.479 kb on + strand, within ABID97_RS02190at 441.479 kb on + strand, within ABID97_RS02190at 441.480 kb on - strand, within ABID97_RS02190at 441.560 kb on + strand, within ABID97_RS02190at 441.561 kb on - strand, within ABID97_RS02190at 441.596 kb on + strand, within ABID97_RS02190at 441.596 kb on + strand, within ABID97_RS02190at 441.596 kb on + strand, within ABID97_RS02190at 441.597 kb on - strand, within ABID97_RS02190at 441.597 kb on - strand, within ABID97_RS02190at 441.740 kb on + strand, within ABID97_RS02190at 441.740 kb on + strand, within ABID97_RS02190at 441.740 kb on + strand, within ABID97_RS02190at 441.741 kb on - strand, within ABID97_RS02190at 441.741 kb on - strand, within ABID97_RS02190at 441.741 kb on - strand, within ABID97_RS02190at 441.995 kb on + strand, within ABID97_RS02190at 441.995 kb on + strand, within ABID97_RS02190at 441.996 kb on - strand, within ABID97_RS02190at 441.996 kb on - strand, within ABID97_RS02190at 442.008 kb on + strand, within ABID97_RS02190at 442.008 kb on + strand, within ABID97_RS02190at 442.009 kb on - strand, within ABID97_RS02190at 442.043 kb on + strand, within ABID97_RS02190at 442.043 kb on + strand, within ABID97_RS02190at 442.043 kb on + strand, within ABID97_RS02190at 442.044 kb on - strand, within ABID97_RS02190at 442.044 kb on - strand, within ABID97_RS02190at 442.044 kb on - strand, within ABID97_RS02190at 442.121 kb on + strand, within ABID97_RS02190at 442.121 kb on + strand, within ABID97_RS02190at 442.122 kb on - strand, within ABID97_RS02190at 442.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_S63 10 MOI
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439,723 + ABID97_RS02180 0.14 +3.1
439,724 - ABID97_RS02180 0.14 +3.4
439,753 + ABID97_RS02180 0.16 +3.3
439,784 + ABID97_RS02180 0.19 +3.3
439,784 + ABID97_RS02180 0.19 +3.2
439,785 - ABID97_RS02180 0.19 +3.8
439,785 - ABID97_RS02180 0.19 +3.4
439,826 + ABID97_RS02180 0.23 +3.3
439,826 + ABID97_RS02180 0.23 +2.9
439,827 - ABID97_RS02180 0.23 +3.4
439,827 - ABID97_RS02180 0.23 +2.8
439,827 - ABID97_RS02180 0.23 +3.2
439,827 - ABID97_RS02180 0.23 +3.4
439,827 - ABID97_RS02180 0.23 +3.2
439,827 - ABID97_RS02180 0.23 +3.4
439,827 - ABID97_RS02180 0.23 +3.6
439,827 - ABID97_RS02180 0.23 +3.2
439,827 - ABID97_RS02180 0.23 +3.2
439,827 - ABID97_RS02180 0.23 +3.2
439,829 - ABID97_RS02180 0.23 +3.2
439,829 - ABID97_RS02180 0.23 +3.0
439,829 - ABID97_RS02180 0.23 +3.4
439,906 + ABID97_RS02180 0.30 +3.3
439,914 - ABID97_RS02180 0.31 +3.4
439,914 - ABID97_RS02180 0.31 +3.3
439,972 - ABID97_RS02180 0.36 +3.4
440,018 + ABID97_RS02180 0.40 +3.2
440,018 + ABID97_RS02180 0.40 +3.4
440,018 + ABID97_RS02180 0.40 +3.3
440,018 + ABID97_RS02180 0.40 +3.4
440,018 + ABID97_RS02180 0.40 +2.9
440,022 + ABID97_RS02180 0.41 +3.1
440,022 + ABID97_RS02180 0.41 +3.3
440,022 + ABID97_RS02180 0.41 +3.5
440,022 + ABID97_RS02180 0.41 +2.0
440,022 + ABID97_RS02180 0.41 +3.3
440,022 + ABID97_RS02180 0.41 +2.8
440,023 - ABID97_RS02180 0.41 +3.1
440,023 - ABID97_RS02180 0.41 +3.2
440,023 - ABID97_RS02180 0.41 +2.9
440,023 - ABID97_RS02180 0.41 +3.0
440,023 - ABID97_RS02180 0.41 +3.6
440,023 - ABID97_RS02180 0.41 +4.8
440,023 - ABID97_RS02180 0.41 +4.0
440,026 + ABID97_RS02180 0.41 +2.9
440,027 - ABID97_RS02180 0.41 +4.1
440,027 - ABID97_RS02180 0.41 +2.8
440,052 + ABID97_RS02180 0.43 +2.9
440,114 - ABID97_RS02180 0.49 +3.3
440,188 + ABID97_RS02180 0.56 +3.4
440,188 + ABID97_RS02180 0.56 +3.8
440,188 + ABID97_RS02180 0.56 +4.8
440,188 + ABID97_RS02180 0.56 +3.2
440,189 - ABID97_RS02180 0.56 +4.3
440,189 - ABID97_RS02180 0.56 +4.0
440,189 - ABID97_RS02180 0.56 +3.8
440,189 - +2.8
440,189 - ABID97_RS02180 0.56 +4.3
440,189 - ABID97_RS02180 0.56 +4.1
440,390 + ABID97_RS02180 0.74 +3.2
440,391 - ABID97_RS02180 0.74 +3.1
440,391 - ABID97_RS02180 0.74 +3.5
440,397 + ABID97_RS02180 0.75 +3.2
440,398 - ABID97_RS02180 0.75 +3.1
440,398 - ABID97_RS02180 0.75 +3.1
440,398 - ABID97_RS02180 0.75 +2.8
440,398 - ABID97_RS02180 0.75 +3.6
440,398 - ABID97_RS02180 0.75 +3.4
440,590 + +2.9
440,590 + +3.0
440,590 + +3.5
440,590 + +3.1
440,590 + +3.6
440,591 - +3.2
440,591 - +3.5
440,591 - +3.1
440,591 - +3.3
440,591 - +4.0
440,591 - +2.8
440,591 - +3.4
440,591 - +3.8
440,591 - +3.5
440,739 + +3.7
440,739 + +3.5
440,739 + +3.7
440,739 + +3.2
440,739 + +2.9
440,740 - +3.1
440,908 + ABID97_RS02185 0.37 +3.9
440,909 - ABID97_RS02185 0.38 +3.3
440,921 + ABID97_RS02185 0.40 +3.1
440,921 + ABID97_RS02185 0.40 +3.4
440,976 + ABID97_RS02185 0.49 +3.6
441,012 + ABID97_RS02185 0.55 +3.5
441,012 + ABID97_RS02185 0.55 +3.3
441,012 + ABID97_RS02185 0.55 +3.3
441,012 + ABID97_RS02185 0.55 +3.5
441,012 + ABID97_RS02185 0.55 +3.7
441,013 - ABID97_RS02185 0.55 +3.0
441,013 - ABID97_RS02185 0.55 +3.9
441,013 - ABID97_RS02185 0.55 +4.0
441,013 - ABID97_RS02185 0.55 +3.5
441,013 - ABID97_RS02185 0.55 +3.2
441,075 + ABID97_RS02185 0.66 +3.4
441,075 + ABID97_RS02185 0.66 +3.5
441,075 + ABID97_RS02185 0.66 +3.3
441,076 - ABID97_RS02185 0.66 +3.4
441,407 + ABID97_RS02190 0.15 +4.0
441,408 - ABID97_RS02190 0.15 +3.3
441,408 - ABID97_RS02190 0.15 +3.4
441,408 - ABID97_RS02190 0.15 +3.7
441,479 + ABID97_RS02190 0.22 +3.4
441,479 + ABID97_RS02190 0.22 +2.6
441,480 - ABID97_RS02190 0.22 +3.1
441,560 + ABID97_RS02190 0.31 +3.3
441,561 - ABID97_RS02190 0.31 +3.1
441,596 + ABID97_RS02190 0.34 +2.9
441,596 + ABID97_RS02190 0.34 +3.3
441,596 + ABID97_RS02190 0.34 +3.4
441,597 - ABID97_RS02190 0.34 +3.4
441,597 - ABID97_RS02190 0.34 +3.4
441,740 + ABID97_RS02190 0.49 +3.2
441,740 + ABID97_RS02190 0.49 +3.2
441,740 + ABID97_RS02190 0.49 +3.0
441,741 - ABID97_RS02190 0.50 +4.5
441,741 - ABID97_RS02190 0.50 +3.5
441,741 - ABID97_RS02190 0.50 +3.0
441,995 + ABID97_RS02190 0.76 +2.7
441,995 + ABID97_RS02190 0.76 +3.4
441,996 - ABID97_RS02190 0.76 +3.3
441,996 - ABID97_RS02190 0.76 +2.8
442,008 + ABID97_RS02190 0.78 +3.2
442,008 + ABID97_RS02190 0.78 +3.1
442,009 - ABID97_RS02190 0.78 +3.1
442,043 + ABID97_RS02190 0.81 +3.4
442,043 + ABID97_RS02190 0.81 +3.5
442,043 + ABID97_RS02190 0.81 +3.1
442,044 - ABID97_RS02190 0.81 +3.2
442,044 - ABID97_RS02190 0.81 +3.4
442,044 - ABID97_RS02190 0.81 +3.8
442,121 + ABID97_RS02190 0.89 +2.7
442,121 + ABID97_RS02190 0.89 +3.2
442,122 - ABID97_RS02190 0.90 +3.4
442,182 - +3.4

Or see this region's nucleotide sequence