Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02115

Experiment: phage_S63 10 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02105 and ABID97_RS02110 are separated by 128 nucleotidesABID97_RS02110 and ABID97_RS02115 overlap by 4 nucleotidesABID97_RS02115 and ABID97_RS02120 overlap by 4 nucleotidesABID97_RS02120 and ABID97_RS02125 are separated by 13 nucleotides ABID97_RS02105: ABID97_RS02105 - Wzy polymerase domain-containing protein, at 421,946 to 423,682 _RS02105 ABID97_RS02110: ABID97_RS02110 - type IV pilus modification protein PilV, at 423,811 to 424,398 _RS02110 ABID97_RS02115: ABID97_RS02115 - PilW family protein, at 424,395 to 425,426 _RS02115 ABID97_RS02120: ABID97_RS02120 - PilX N-terminal domain-containing pilus assembly protein, at 425,423 to 426,046 _RS02120 ABID97_RS02125: ABID97_RS02125 - PilC/PilY family type IV pilus protein, at 426,060 to 430,451 _RS02125 Position (kb) 424 425 426Strain fitness (log2 ratio) -1 0 1 2 3 4at 423.721 kb on - strandat 423.879 kb on - strand, within ABID97_RS02110at 423.879 kb on - strand, within ABID97_RS02110at 423.917 kb on + strand, within ABID97_RS02110at 423.918 kb on - strand, within ABID97_RS02110at 423.918 kb on - strand, within ABID97_RS02110at 423.980 kb on + strand, within ABID97_RS02110at 423.980 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.096 kb on + strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.097 kb on - strand, within ABID97_RS02110at 424.229 kb on - strand, within ABID97_RS02110at 424.771 kb on - strand, within ABID97_RS02115at 424.771 kb on - strand, within ABID97_RS02115at 424.788 kb on + strand, within ABID97_RS02115at 424.789 kb on - strand, within ABID97_RS02115at 424.915 kb on - strand, within ABID97_RS02115at 424.984 kb on - strand, within ABID97_RS02115at 424.984 kb on - strand, within ABID97_RS02115at 424.984 kb on - strand, within ABID97_RS02115at 425.081 kb on + strand, within ABID97_RS02115at 425.127 kb on + strand, within ABID97_RS02115at 425.127 kb on + strand, within ABID97_RS02115at 425.127 kb on + strand, within ABID97_RS02115at 425.127 kb on + strand, within ABID97_RS02115at 425.128 kb on - strand, within ABID97_RS02115at 425.128 kb on - strand, within ABID97_RS02115at 425.422 kb on + strandat 425.422 kb on + strandat 425.423 kb on - strandat 425.423 kb on - strandat 425.423 kb on - strandat 425.429 kb on + strandat 425.429 kb on + strandat 425.429 kb on + strandat 425.430 kb on - strandat 425.430 kb on - strandat 425.430 kb on - strandat 425.430 kb on - strandat 425.430 kb on - strandat 425.903 kb on + strand, within ABID97_RS02120at 425.904 kb on - strand, within ABID97_RS02120at 425.904 kb on - strand, within ABID97_RS02120at 425.966 kb on + strand, within ABID97_RS02120at 425.966 kb on + strand, within ABID97_RS02120at 425.966 kb on + strand, within ABID97_RS02120at 425.966 kb on + strand, within ABID97_RS02120at 425.966 kb on + strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 426.273 kb on + strandat 426.348 kb on + strandat 426.348 kb on + strandat 426.349 kb on - strandat 426.349 kb on - strandat 426.378 kb on + strandat 426.379 kb on - strandat 426.397 kb on - strandat 426.406 kb on - strandat 426.406 kb on - strandat 426.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_S63 10 MOI
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423,721 - +1.2
423,879 - ABID97_RS02110 0.12 +3.4
423,879 - ABID97_RS02110 0.12 +3.5
423,917 + ABID97_RS02110 0.18 +4.2
423,918 - ABID97_RS02110 0.18 +3.6
423,918 - ABID97_RS02110 0.18 +2.2
423,980 + ABID97_RS02110 0.29 +3.3
423,980 + ABID97_RS02110 0.29 +4.0
424,096 + ABID97_RS02110 0.48 +3.4
424,096 + ABID97_RS02110 0.48 +3.5
424,096 + ABID97_RS02110 0.48 +3.6
424,096 + ABID97_RS02110 0.48 +3.3
424,096 + ABID97_RS02110 0.48 +3.4
424,096 + ABID97_RS02110 0.48 +3.4
424,096 + ABID97_RS02110 0.48 +3.6
424,096 + ABID97_RS02110 0.48 +3.4
424,096 + ABID97_RS02110 0.48 +3.6
424,096 + ABID97_RS02110 0.48 +3.1
424,096 + ABID97_RS02110 0.48 +3.4
424,097 - ABID97_RS02110 0.49 +4.3
424,097 - ABID97_RS02110 0.49 +3.2
424,097 - ABID97_RS02110 0.49 +3.6
424,097 - ABID97_RS02110 0.49 +3.2
424,097 - ABID97_RS02110 0.49 +3.2
424,097 - ABID97_RS02110 0.49 +2.9
424,097 - ABID97_RS02110 0.49 +3.1
424,097 - ABID97_RS02110 0.49 +3.4
424,097 - ABID97_RS02110 0.49 +3.3
424,097 - ABID97_RS02110 0.49 +3.3
424,097 - ABID97_RS02110 0.49 +3.5
424,229 - ABID97_RS02110 0.71 +3.5
424,771 - ABID97_RS02115 0.36 +3.3
424,771 - ABID97_RS02115 0.36 +3.6
424,788 + ABID97_RS02115 0.38 +3.5
424,789 - ABID97_RS02115 0.38 +2.8
424,915 - ABID97_RS02115 0.50 +3.1
424,984 - ABID97_RS02115 0.57 +3.4
424,984 - ABID97_RS02115 0.57 +3.6
424,984 - ABID97_RS02115 0.57 +3.7
425,081 + ABID97_RS02115 0.66 +3.4
425,127 + ABID97_RS02115 0.71 +3.0
425,127 + ABID97_RS02115 0.71 +3.8
425,127 + ABID97_RS02115 0.71 +3.4
425,127 + ABID97_RS02115 0.71 +3.1
425,128 - ABID97_RS02115 0.71 +3.1
425,128 - ABID97_RS02115 0.71 +3.2
425,422 + +2.4
425,422 + +2.1
425,423 - +2.9
425,423 - +3.3
425,423 - +2.9
425,429 + +2.0
425,429 + +2.6
425,429 + +2.9
425,430 - +3.2
425,430 - +3.2
425,430 - +3.1
425,430 - +3.7
425,430 - +3.3
425,903 + ABID97_RS02120 0.77 +3.2
425,904 - ABID97_RS02120 0.77 +3.6
425,904 - ABID97_RS02120 0.77 +3.3
425,966 + ABID97_RS02120 0.87 +3.5
425,966 + ABID97_RS02120 0.87 +3.2
425,966 + ABID97_RS02120 0.87 +3.2
425,966 + ABID97_RS02120 0.87 +1.8
425,966 + ABID97_RS02120 0.87 +3.6
425,967 - ABID97_RS02120 0.87 +3.2
425,967 - ABID97_RS02120 0.87 +3.8
425,967 - ABID97_RS02120 0.87 +3.5
425,967 - ABID97_RS02120 0.87 +3.3
425,967 - ABID97_RS02120 0.87 +2.2
425,967 - ABID97_RS02120 0.87 +3.5
425,967 - ABID97_RS02120 0.87 +3.3
425,967 - ABID97_RS02120 0.87 +3.1
426,273 + +3.3
426,348 + +2.9
426,348 + +4.1
426,349 - +2.9
426,349 - +3.5
426,378 + +3.2
426,379 - +3.8
426,397 - +3.0
426,406 - +3.1
426,406 - +3.3
426,409 - +1.2

Or see this region's nucleotide sequence