Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14935

Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14925 and ABIE41_RS14930 are separated by 118 nucleotidesABIE41_RS14930 and ABIE41_RS14935 are separated by 103 nucleotidesABIE41_RS14935 and ABIE41_RS14940 are separated by 3 nucleotidesABIE41_RS14940 and ABIE41_RS14945 are separated by 247 nucleotides ABIE41_RS14925: ABIE41_RS14925 - aminotransferase, at 3,047,867 to 3,049,051 _RS14925 ABIE41_RS14930: ABIE41_RS14930 - Sir2 family NAD-dependent protein deacetylase, at 3,049,170 to 3,049,925 _RS14930 ABIE41_RS14935: ABIE41_RS14935 - DUF3429 domain-containing protein, at 3,050,029 to 3,050,484 _RS14935 ABIE41_RS14940: ABIE41_RS14940 - LysE family translocator, at 3,050,488 to 3,051,120 _RS14940 ABIE41_RS14945: ABIE41_RS14945 - cold-shock protein, at 3,051,368 to 3,051,916 _RS14945 Position (kb) 3050 3051Strain fitness (log2 ratio) -2 -1 0 1 2at 3049.153 kb on + strandat 3049.401 kb on + strand, within ABIE41_RS14930at 3049.401 kb on + strand, within ABIE41_RS14930at 3049.402 kb on - strand, within ABIE41_RS14930at 3049.557 kb on + strand, within ABIE41_RS14930at 3049.557 kb on + strand, within ABIE41_RS14930at 3049.557 kb on + strand, within ABIE41_RS14930at 3049.557 kb on + strand, within ABIE41_RS14930at 3049.557 kb on + strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.780 kb on - strand, within ABIE41_RS14930at 3049.987 kb on + strandat 3049.987 kb on + strandat 3049.987 kb on + strandat 3049.987 kb on + strandat 3049.988 kb on - strandat 3049.988 kb on - strandat 3050.179 kb on + strand, within ABIE41_RS14935at 3050.180 kb on - strand, within ABIE41_RS14935at 3050.237 kb on - strand, within ABIE41_RS14935at 3050.386 kb on + strand, within ABIE41_RS14935at 3050.387 kb on - strand, within ABIE41_RS14935at 3050.387 kb on - strand, within ABIE41_RS14935at 3050.413 kb on + strand, within ABIE41_RS14935at 3050.873 kb on + strand, within ABIE41_RS14940at 3050.874 kb on - strand, within ABIE41_RS14940at 3050.966 kb on + strand, within ABIE41_RS14940at 3050.966 kb on + strand, within ABIE41_RS14940at 3050.966 kb on + strand, within ABIE41_RS14940at 3050.967 kb on - strand, within ABIE41_RS14940at 3050.967 kb on - strand, within ABIE41_RS14940at 3050.990 kb on + strand, within ABIE41_RS14940at 3050.990 kb on + strand, within ABIE41_RS14940at 3050.990 kb on + strand, within ABIE41_RS14940at 3050.990 kb on + strand, within ABIE41_RS14940at 3050.991 kb on - strand, within ABIE41_RS14940at 3050.991 kb on - strand, within ABIE41_RS14940at 3051.232 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM
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3,049,153 + +0.1
3,049,401 + ABIE41_RS14930 0.31 -0.1
3,049,401 + ABIE41_RS14930 0.31 +0.2
3,049,402 - ABIE41_RS14930 0.31 -0.8
3,049,557 + ABIE41_RS14930 0.51 +0.1
3,049,557 + ABIE41_RS14930 0.51 +0.1
3,049,557 + ABIE41_RS14930 0.51 +0.1
3,049,557 + ABIE41_RS14930 0.51 +1.1
3,049,557 + ABIE41_RS14930 0.51 -0.1
3,049,558 - ABIE41_RS14930 0.51 +0.5
3,049,558 - ABIE41_RS14930 0.51 +0.6
3,049,558 - ABIE41_RS14930 0.51 +0.1
3,049,558 - ABIE41_RS14930 0.51 +0.6
3,049,558 - ABIE41_RS14930 0.51 -0.1
3,049,558 - ABIE41_RS14930 0.51 +0.4
3,049,558 - ABIE41_RS14930 0.51 +0.9
3,049,558 - ABIE41_RS14930 0.51 +0.5
3,049,558 - ABIE41_RS14930 0.51 +0.3
3,049,780 - ABIE41_RS14930 0.81 -0.6
3,049,987 + +0.9
3,049,987 + +0.4
3,049,987 + -0.3
3,049,987 + +2.0
3,049,988 - -0.3
3,049,988 - +2.0
3,050,179 + ABIE41_RS14935 0.33 -0.2
3,050,180 - ABIE41_RS14935 0.33 -1.0
3,050,237 - ABIE41_RS14935 0.46 -0.7
3,050,386 + ABIE41_RS14935 0.78 +0.2
3,050,387 - ABIE41_RS14935 0.79 +0.1
3,050,387 - ABIE41_RS14935 0.79 -1.3
3,050,413 + ABIE41_RS14935 0.84 +0.1
3,050,873 + ABIE41_RS14940 0.61 +1.0
3,050,874 - ABIE41_RS14940 0.61 -0.5
3,050,966 + ABIE41_RS14940 0.76 +0.2
3,050,966 + ABIE41_RS14940 0.76 -0.8
3,050,966 + ABIE41_RS14940 0.76 -0.1
3,050,967 - ABIE41_RS14940 0.76 +0.1
3,050,967 - ABIE41_RS14940 0.76 +0.9
3,050,990 + ABIE41_RS14940 0.79 -2.4
3,050,990 + ABIE41_RS14940 0.79 +1.3
3,050,990 + ABIE41_RS14940 0.79 -0.1
3,050,990 + ABIE41_RS14940 0.79 +0.5
3,050,991 - ABIE41_RS14940 0.79 -1.2
3,050,991 - ABIE41_RS14940 0.79 -0.2
3,051,232 + -0.9

Or see this region's nucleotide sequence