Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08550

Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08540 and ABIE41_RS08545 are separated by 211 nucleotidesABIE41_RS08545 and ABIE41_RS08550 are separated by 97 nucleotidesABIE41_RS08550 and ABIE41_RS08555 are separated by 87 nucleotides ABIE41_RS08540: ABIE41_RS08540 - alpha/beta hydrolase, at 1,761,223 to 1,762,290 _RS08540 ABIE41_RS08545: ABIE41_RS08545 - Hsp20 family protein, at 1,762,502 to 1,762,975 _RS08545 ABIE41_RS08550: ABIE41_RS08550 - hypothetical protein, at 1,763,073 to 1,764,008 _RS08550 ABIE41_RS08555: ABIE41_RS08555 - low specificity L-threonine aldolase, at 1,764,096 to 1,765,160 _RS08555 Position (kb) 1763 1764 1765Strain fitness (log2 ratio) -1 0 1 2 3at 1762.256 kb on + strandat 1762.257 kb on - strandat 1762.257 kb on - strandat 1762.355 kb on + strandat 1762.355 kb on + strandat 1762.356 kb on - strandat 1762.356 kb on - strandat 1762.356 kb on - strandat 1762.490 kb on + strandat 1762.490 kb on + strandat 1762.491 kb on - strandat 1762.491 kb on - strandat 1762.491 kb on - strandat 1762.613 kb on + strand, within ABIE41_RS08545at 1762.613 kb on + strand, within ABIE41_RS08545at 1762.613 kb on + strand, within ABIE41_RS08545at 1762.613 kb on + strand, within ABIE41_RS08545at 1762.614 kb on - strand, within ABIE41_RS08545at 1762.614 kb on - strand, within ABIE41_RS08545at 1762.614 kb on - strand, within ABIE41_RS08545at 1762.643 kb on + strand, within ABIE41_RS08545at 1762.644 kb on - strand, within ABIE41_RS08545at 1762.820 kb on + strand, within ABIE41_RS08545at 1762.821 kb on - strand, within ABIE41_RS08545at 1762.821 kb on - strand, within ABIE41_RS08545at 1763.255 kb on + strand, within ABIE41_RS08550at 1763.678 kb on + strand, within ABIE41_RS08550at 1763.680 kb on + strand, within ABIE41_RS08550at 1763.680 kb on + strand, within ABIE41_RS08550at 1763.680 kb on + strand, within ABIE41_RS08550at 1763.681 kb on - strand, within ABIE41_RS08550at 1763.737 kb on + strand, within ABIE41_RS08550at 1763.737 kb on + strand, within ABIE41_RS08550at 1763.738 kb on - strand, within ABIE41_RS08550at 1763.738 kb on - strand, within ABIE41_RS08550at 1763.738 kb on - strand, within ABIE41_RS08550at 1763.738 kb on - strand, within ABIE41_RS08550at 1763.738 kb on - strand, within ABIE41_RS08550at 1763.848 kb on + strand, within ABIE41_RS08550at 1763.848 kb on + strand, within ABIE41_RS08550at 1763.848 kb on + strand, within ABIE41_RS08550at 1763.849 kb on - strand, within ABIE41_RS08550at 1763.849 kb on - strand, within ABIE41_RS08550at 1763.908 kb on + strand, within ABIE41_RS08550at 1763.908 kb on + strand, within ABIE41_RS08550at 1763.908 kb on + strand, within ABIE41_RS08550at 1763.908 kb on + strand, within ABIE41_RS08550at 1763.909 kb on - strand, within ABIE41_RS08550at 1763.909 kb on - strand, within ABIE41_RS08550at 1763.909 kb on - strand, within ABIE41_RS08550at 1763.911 kb on + strand, within ABIE41_RS08550at 1763.911 kb on + strand, within ABIE41_RS08550at 1763.912 kb on - strand, within ABIE41_RS08550at 1763.912 kb on - strand, within ABIE41_RS08550at 1763.912 kb on - strand, within ABIE41_RS08550at 1764.238 kb on + strand, within ABIE41_RS08555at 1764.615 kb on + strand, within ABIE41_RS08555at 1764.615 kb on + strand, within ABIE41_RS08555at 1764.616 kb on - strand, within ABIE41_RS08555at 1764.616 kb on - strand, within ABIE41_RS08555at 1764.715 kb on + strand, within ABIE41_RS08555at 1764.715 kb on + strand, within ABIE41_RS08555at 1764.716 kb on - strand, within ABIE41_RS08555at 1764.716 kb on - strand, within ABIE41_RS08555at 1764.716 kb on - strand, within ABIE41_RS08555at 1764.716 kb on - strand, within ABIE41_RS08555at 1764.716 kb on - strand, within ABIE41_RS08555at 1764.716 kb on - strand, within ABIE41_RS08555at 1764.716 kb on - strand, within ABIE41_RS08555

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM
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1,762,256 + -1.5
1,762,257 - +0.0
1,762,257 - +0.6
1,762,355 + +0.1
1,762,355 + -0.9
1,762,356 - -0.9
1,762,356 - +0.8
1,762,356 - +0.6
1,762,490 + +1.5
1,762,490 + -0.2
1,762,491 - +2.1
1,762,491 - +1.1
1,762,491 - +0.5
1,762,613 + ABIE41_RS08545 0.23 +1.0
1,762,613 + ABIE41_RS08545 0.23 +0.6
1,762,613 + ABIE41_RS08545 0.23 +0.9
1,762,613 + ABIE41_RS08545 0.23 -1.2
1,762,614 - ABIE41_RS08545 0.24 +0.3
1,762,614 - ABIE41_RS08545 0.24 +0.5
1,762,614 - ABIE41_RS08545 0.24 +0.3
1,762,643 + ABIE41_RS08545 0.30 +0.6
1,762,644 - ABIE41_RS08545 0.30 +1.3
1,762,820 + ABIE41_RS08545 0.67 -0.8
1,762,821 - ABIE41_RS08545 0.67 +0.1
1,762,821 - ABIE41_RS08545 0.67 -0.7
1,763,255 + ABIE41_RS08550 0.19 +1.6
1,763,678 + ABIE41_RS08550 0.65 +1.9
1,763,680 + ABIE41_RS08550 0.65 +0.6
1,763,680 + ABIE41_RS08550 0.65 +0.8
1,763,680 + ABIE41_RS08550 0.65 +0.1
1,763,681 - ABIE41_RS08550 0.65 +1.4
1,763,737 + ABIE41_RS08550 0.71 -0.4
1,763,737 + ABIE41_RS08550 0.71 +1.6
1,763,738 - ABIE41_RS08550 0.71 +1.5
1,763,738 - ABIE41_RS08550 0.71 +3.0
1,763,738 - ABIE41_RS08550 0.71 +2.3
1,763,738 - ABIE41_RS08550 0.71 +0.9
1,763,738 - ABIE41_RS08550 0.71 +0.2
1,763,848 + ABIE41_RS08550 0.83 +0.6
1,763,848 + ABIE41_RS08550 0.83 +0.3
1,763,848 + ABIE41_RS08550 0.83 +1.9
1,763,849 - ABIE41_RS08550 0.83 +0.8
1,763,849 - ABIE41_RS08550 0.83 +1.1
1,763,908 + ABIE41_RS08550 0.89 +0.3
1,763,908 + ABIE41_RS08550 0.89 +0.8
1,763,908 + ABIE41_RS08550 0.89 +0.2
1,763,908 + ABIE41_RS08550 0.89 +1.3
1,763,909 - ABIE41_RS08550 0.89 +0.6
1,763,909 - ABIE41_RS08550 0.89 +1.3
1,763,909 - ABIE41_RS08550 0.89 +1.0
1,763,911 + ABIE41_RS08550 0.90 +0.1
1,763,911 + ABIE41_RS08550 0.90 +0.7
1,763,912 - ABIE41_RS08550 0.90 +1.6
1,763,912 - ABIE41_RS08550 0.90 +0.9
1,763,912 - ABIE41_RS08550 0.90 +1.8
1,764,238 + ABIE41_RS08555 0.13 +0.3
1,764,615 + ABIE41_RS08555 0.49 +0.4
1,764,615 + ABIE41_RS08555 0.49 +0.6
1,764,616 - ABIE41_RS08555 0.49 +0.7
1,764,616 - ABIE41_RS08555 0.49 +0.5
1,764,715 + ABIE41_RS08555 0.58 +0.1
1,764,715 + ABIE41_RS08555 0.58 +0.7
1,764,716 - ABIE41_RS08555 0.58 -0.2
1,764,716 - ABIE41_RS08555 0.58 -0.7
1,764,716 - ABIE41_RS08555 0.58 +0.7
1,764,716 - ABIE41_RS08555 0.58 +0.8
1,764,716 - ABIE41_RS08555 0.58 +0.2
1,764,716 - ABIE41_RS08555 0.58 +0.7
1,764,716 - ABIE41_RS08555 0.58 -0.4

Or see this region's nucleotide sequence