Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08540 and ABIE41_RS08545 are separated by 211 nucleotides ABIE41_RS08545 and ABIE41_RS08550 are separated by 97 nucleotides ABIE41_RS08550 and ABIE41_RS08555 are separated by 87 nucleotides
ABIE41_RS08540: ABIE41_RS08540 - alpha/beta hydrolase, at 1,761,223 to 1,762,290
_RS08540
ABIE41_RS08545: ABIE41_RS08545 - Hsp20 family protein, at 1,762,502 to 1,762,975
_RS08545
ABIE41_RS08550: ABIE41_RS08550 - hypothetical protein, at 1,763,073 to 1,764,008
_RS08550
ABIE41_RS08555: ABIE41_RS08555 - low specificity L-threonine aldolase, at 1,764,096 to 1,765,160
_RS08555
Position (kb)
1763
1764
1765 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1762.256 kb on + strand at 1762.257 kb on - strand at 1762.257 kb on - strand at 1762.355 kb on + strand at 1762.355 kb on + strand at 1762.356 kb on - strand at 1762.356 kb on - strand at 1762.356 kb on - strand at 1762.490 kb on + strand at 1762.490 kb on + strand at 1762.491 kb on - strand at 1762.491 kb on - strand at 1762.491 kb on - strand at 1762.613 kb on + strand, within ABIE41_RS08545 at 1762.613 kb on + strand, within ABIE41_RS08545 at 1762.613 kb on + strand, within ABIE41_RS08545 at 1762.613 kb on + strand, within ABIE41_RS08545 at 1762.614 kb on - strand, within ABIE41_RS08545 at 1762.614 kb on - strand, within ABIE41_RS08545 at 1762.614 kb on - strand, within ABIE41_RS08545 at 1762.643 kb on + strand, within ABIE41_RS08545 at 1762.644 kb on - strand, within ABIE41_RS08545 at 1762.820 kb on + strand, within ABIE41_RS08545 at 1762.821 kb on - strand, within ABIE41_RS08545 at 1762.821 kb on - strand, within ABIE41_RS08545 at 1763.255 kb on + strand, within ABIE41_RS08550 at 1763.678 kb on + strand, within ABIE41_RS08550 at 1763.680 kb on + strand, within ABIE41_RS08550 at 1763.680 kb on + strand, within ABIE41_RS08550 at 1763.680 kb on + strand, within ABIE41_RS08550 at 1763.681 kb on - strand, within ABIE41_RS08550 at 1763.737 kb on + strand, within ABIE41_RS08550 at 1763.737 kb on + strand, within ABIE41_RS08550 at 1763.738 kb on - strand, within ABIE41_RS08550 at 1763.738 kb on - strand, within ABIE41_RS08550 at 1763.738 kb on - strand, within ABIE41_RS08550 at 1763.738 kb on - strand, within ABIE41_RS08550 at 1763.738 kb on - strand, within ABIE41_RS08550 at 1763.848 kb on + strand, within ABIE41_RS08550 at 1763.848 kb on + strand, within ABIE41_RS08550 at 1763.848 kb on + strand, within ABIE41_RS08550 at 1763.849 kb on - strand, within ABIE41_RS08550 at 1763.849 kb on - strand, within ABIE41_RS08550 at 1763.908 kb on + strand, within ABIE41_RS08550 at 1763.908 kb on + strand, within ABIE41_RS08550 at 1763.908 kb on + strand, within ABIE41_RS08550 at 1763.908 kb on + strand, within ABIE41_RS08550 at 1763.909 kb on - strand, within ABIE41_RS08550 at 1763.909 kb on - strand, within ABIE41_RS08550 at 1763.909 kb on - strand, within ABIE41_RS08550 at 1763.911 kb on + strand, within ABIE41_RS08550 at 1763.911 kb on + strand, within ABIE41_RS08550 at 1763.912 kb on - strand, within ABIE41_RS08550 at 1763.912 kb on - strand, within ABIE41_RS08550 at 1763.912 kb on - strand, within ABIE41_RS08550 at 1764.238 kb on + strand, within ABIE41_RS08555 at 1764.615 kb on + strand, within ABIE41_RS08555 at 1764.615 kb on + strand, within ABIE41_RS08555 at 1764.616 kb on - strand, within ABIE41_RS08555 at 1764.616 kb on - strand, within ABIE41_RS08555 at 1764.715 kb on + strand, within ABIE41_RS08555 at 1764.715 kb on + strand, within ABIE41_RS08555 at 1764.716 kb on - strand, within ABIE41_RS08555 at 1764.716 kb on - strand, within ABIE41_RS08555 at 1764.716 kb on - strand, within ABIE41_RS08555 at 1764.716 kb on - strand, within ABIE41_RS08555 at 1764.716 kb on - strand, within ABIE41_RS08555 at 1764.716 kb on - strand, within ABIE41_RS08555 at 1764.716 kb on - strand, within ABIE41_RS08555
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM remove 1,762,256 + -1.5 1,762,257 - +0.0 1,762,257 - +0.6 1,762,355 + +0.1 1,762,355 + -0.9 1,762,356 - -0.9 1,762,356 - +0.8 1,762,356 - +0.6 1,762,490 + +1.5 1,762,490 + -0.2 1,762,491 - +2.1 1,762,491 - +1.1 1,762,491 - +0.5 1,762,613 + ABIE41_RS08545 0.23 +1.0 1,762,613 + ABIE41_RS08545 0.23 +0.6 1,762,613 + ABIE41_RS08545 0.23 +0.9 1,762,613 + ABIE41_RS08545 0.23 -1.2 1,762,614 - ABIE41_RS08545 0.24 +0.3 1,762,614 - ABIE41_RS08545 0.24 +0.5 1,762,614 - ABIE41_RS08545 0.24 +0.3 1,762,643 + ABIE41_RS08545 0.30 +0.6 1,762,644 - ABIE41_RS08545 0.30 +1.3 1,762,820 + ABIE41_RS08545 0.67 -0.8 1,762,821 - ABIE41_RS08545 0.67 +0.1 1,762,821 - ABIE41_RS08545 0.67 -0.7 1,763,255 + ABIE41_RS08550 0.19 +1.6 1,763,678 + ABIE41_RS08550 0.65 +1.9 1,763,680 + ABIE41_RS08550 0.65 +0.6 1,763,680 + ABIE41_RS08550 0.65 +0.8 1,763,680 + ABIE41_RS08550 0.65 +0.1 1,763,681 - ABIE41_RS08550 0.65 +1.4 1,763,737 + ABIE41_RS08550 0.71 -0.4 1,763,737 + ABIE41_RS08550 0.71 +1.6 1,763,738 - ABIE41_RS08550 0.71 +1.5 1,763,738 - ABIE41_RS08550 0.71 +3.0 1,763,738 - ABIE41_RS08550 0.71 +2.3 1,763,738 - ABIE41_RS08550 0.71 +0.9 1,763,738 - ABIE41_RS08550 0.71 +0.2 1,763,848 + ABIE41_RS08550 0.83 +0.6 1,763,848 + ABIE41_RS08550 0.83 +0.3 1,763,848 + ABIE41_RS08550 0.83 +1.9 1,763,849 - ABIE41_RS08550 0.83 +0.8 1,763,849 - ABIE41_RS08550 0.83 +1.1 1,763,908 + ABIE41_RS08550 0.89 +0.3 1,763,908 + ABIE41_RS08550 0.89 +0.8 1,763,908 + ABIE41_RS08550 0.89 +0.2 1,763,908 + ABIE41_RS08550 0.89 +1.3 1,763,909 - ABIE41_RS08550 0.89 +0.6 1,763,909 - ABIE41_RS08550 0.89 +1.3 1,763,909 - ABIE41_RS08550 0.89 +1.0 1,763,911 + ABIE41_RS08550 0.90 +0.1 1,763,911 + ABIE41_RS08550 0.90 +0.7 1,763,912 - ABIE41_RS08550 0.90 +1.6 1,763,912 - ABIE41_RS08550 0.90 +0.9 1,763,912 - ABIE41_RS08550 0.90 +1.8 1,764,238 + ABIE41_RS08555 0.13 +0.3 1,764,615 + ABIE41_RS08555 0.49 +0.4 1,764,615 + ABIE41_RS08555 0.49 +0.6 1,764,616 - ABIE41_RS08555 0.49 +0.7 1,764,616 - ABIE41_RS08555 0.49 +0.5 1,764,715 + ABIE41_RS08555 0.58 +0.1 1,764,715 + ABIE41_RS08555 0.58 +0.7 1,764,716 - ABIE41_RS08555 0.58 -0.2 1,764,716 - ABIE41_RS08555 0.58 -0.7 1,764,716 - ABIE41_RS08555 0.58 +0.7 1,764,716 - ABIE41_RS08555 0.58 +0.8 1,764,716 - ABIE41_RS08555 0.58 +0.2 1,764,716 - ABIE41_RS08555 0.58 +0.7 1,764,716 - ABIE41_RS08555 0.58 -0.4
Or see this region's nucleotide sequence