Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07555 and ABIE41_RS07560 overlap by 1 nucleotides ABIE41_RS07560 and ABIE41_RS07565 overlap by 4 nucleotides ABIE41_RS07565 and ABIE41_RS07570 are separated by 15 nucleotides ABIE41_RS07570 and ABIE41_RS07575 are separated by 123 nucleotides
ABIE41_RS07555: ABIE41_RS07555 - S41 family peptidase, at 1,549,126 to 1,550,454
_RS07555
ABIE41_RS07560: ABIE41_RS07560 - peptidoglycan DD-metalloendopeptidase family protein, at 1,550,454 to 1,551,827
_RS07560
ABIE41_RS07565: ABIE41_RS07565 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 1,551,824 to 1,552,303
_RS07565
ABIE41_RS07570: ABIE41_RS07570 - ribosome silencing factor, at 1,552,319 to 1,552,675
_RS07570
ABIE41_RS07575: ABIE41_RS07575 - nicotinate-nucleotide adenylyltransferase, at 1,552,799 to 1,553,422
_RS07575
Position (kb)
1550
1551
1552 Strain fitness (log2 ratio)
-1
0
1 at 1550.535 kb on - strand at 1550.537 kb on - strand at 1550.537 kb on - strand at 1550.537 kb on - strand at 1550.537 kb on - strand at 1550.537 kb on - strand at 1550.537 kb on - strand at 1550.677 kb on + strand, within ABIE41_RS07560 at 1550.677 kb on + strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.681 kb on - strand, within ABIE41_RS07560 at 1550.681 kb on - strand, within ABIE41_RS07560 at 1550.681 kb on - strand, within ABIE41_RS07560 at 1550.696 kb on + strand, within ABIE41_RS07560 at 1550.737 kb on + strand, within ABIE41_RS07560 at 1550.737 kb on + strand, within ABIE41_RS07560 at 1550.769 kb on + strand, within ABIE41_RS07560 at 1550.769 kb on + strand, within ABIE41_RS07560 at 1550.769 kb on + strand, within ABIE41_RS07560 at 1550.770 kb on - strand, within ABIE41_RS07560 at 1551.837 kb on + strand at 1551.837 kb on + strand at 1551.838 kb on - strand at 1551.838 kb on - strand at 1551.840 kb on - strand at 1551.870 kb on + strand at 1551.871 kb on - strand at 1551.896 kb on + strand, within ABIE41_RS07565 at 1551.896 kb on + strand, within ABIE41_RS07565 at 1551.896 kb on + strand, within ABIE41_RS07565 at 1551.897 kb on - strand, within ABIE41_RS07565 at 1551.897 kb on - strand, within ABIE41_RS07565 at 1552.374 kb on + strand, within ABIE41_RS07570 at 1552.375 kb on - strand, within ABIE41_RS07570 at 1552.736 kb on - strand at 1552.778 kb on + strand at 1552.779 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM remove 1,550,535 - -1.7 1,550,537 - -0.1 1,550,537 - +0.6 1,550,537 - -0.2 1,550,537 - +0.1 1,550,537 - +0.7 1,550,537 - +0.2 1,550,677 + ABIE41_RS07560 0.16 +0.9 1,550,677 + ABIE41_RS07560 0.16 -0.0 1,550,678 - ABIE41_RS07560 0.16 -0.2 1,550,678 - ABIE41_RS07560 0.16 +1.4 1,550,678 - ABIE41_RS07560 0.16 +0.9 1,550,678 - ABIE41_RS07560 0.16 +0.0 1,550,678 - ABIE41_RS07560 0.16 +0.2 1,550,678 - ABIE41_RS07560 0.16 +0.1 1,550,678 - ABIE41_RS07560 0.16 +0.1 1,550,681 - ABIE41_RS07560 0.17 -0.1 1,550,681 - ABIE41_RS07560 0.17 -0.1 1,550,681 - ABIE41_RS07560 0.17 +0.5 1,550,696 + ABIE41_RS07560 0.18 +0.9 1,550,737 + ABIE41_RS07560 0.21 +0.2 1,550,737 + ABIE41_RS07560 0.21 -0.4 1,550,769 + ABIE41_RS07560 0.23 +0.1 1,550,769 + ABIE41_RS07560 0.23 +0.3 1,550,769 + ABIE41_RS07560 0.23 +0.4 1,550,770 - ABIE41_RS07560 0.23 +0.5 1,551,837 + -1.0 1,551,837 + +0.1 1,551,838 - +0.6 1,551,838 - +0.1 1,551,840 - -0.0 1,551,870 + -0.7 1,551,871 - -0.1 1,551,896 + ABIE41_RS07565 0.15 -0.2 1,551,896 + ABIE41_RS07565 0.15 +0.8 1,551,896 + ABIE41_RS07565 0.15 +0.3 1,551,897 - ABIE41_RS07565 0.15 -0.7 1,551,897 - ABIE41_RS07565 0.15 +0.6 1,552,374 + ABIE41_RS07570 0.15 +0.7 1,552,375 - ABIE41_RS07570 0.16 +0.1 1,552,736 - +0.1 1,552,778 + +0.7 1,552,779 - -0.0
Or see this region's nucleotide sequence