Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07560

Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07555 and ABIE41_RS07560 overlap by 1 nucleotidesABIE41_RS07560 and ABIE41_RS07565 overlap by 4 nucleotidesABIE41_RS07565 and ABIE41_RS07570 are separated by 15 nucleotidesABIE41_RS07570 and ABIE41_RS07575 are separated by 123 nucleotides ABIE41_RS07555: ABIE41_RS07555 - S41 family peptidase, at 1,549,126 to 1,550,454 _RS07555 ABIE41_RS07560: ABIE41_RS07560 - peptidoglycan DD-metalloendopeptidase family protein, at 1,550,454 to 1,551,827 _RS07560 ABIE41_RS07565: ABIE41_RS07565 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 1,551,824 to 1,552,303 _RS07565 ABIE41_RS07570: ABIE41_RS07570 - ribosome silencing factor, at 1,552,319 to 1,552,675 _RS07570 ABIE41_RS07575: ABIE41_RS07575 - nicotinate-nucleotide adenylyltransferase, at 1,552,799 to 1,553,422 _RS07575 Position (kb) 1550 1551 1552Strain fitness (log2 ratio) -1 0 1at 1550.535 kb on - strandat 1550.537 kb on - strandat 1550.537 kb on - strandat 1550.537 kb on - strandat 1550.537 kb on - strandat 1550.537 kb on - strandat 1550.537 kb on - strandat 1550.677 kb on + strand, within ABIE41_RS07560at 1550.677 kb on + strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.681 kb on - strand, within ABIE41_RS07560at 1550.681 kb on - strand, within ABIE41_RS07560at 1550.681 kb on - strand, within ABIE41_RS07560at 1550.696 kb on + strand, within ABIE41_RS07560at 1550.737 kb on + strand, within ABIE41_RS07560at 1550.737 kb on + strand, within ABIE41_RS07560at 1550.769 kb on + strand, within ABIE41_RS07560at 1550.769 kb on + strand, within ABIE41_RS07560at 1550.769 kb on + strand, within ABIE41_RS07560at 1550.770 kb on - strand, within ABIE41_RS07560at 1551.837 kb on + strandat 1551.837 kb on + strandat 1551.838 kb on - strandat 1551.838 kb on - strandat 1551.840 kb on - strandat 1551.870 kb on + strandat 1551.871 kb on - strandat 1551.896 kb on + strand, within ABIE41_RS07565at 1551.896 kb on + strand, within ABIE41_RS07565at 1551.896 kb on + strand, within ABIE41_RS07565at 1551.897 kb on - strand, within ABIE41_RS07565at 1551.897 kb on - strand, within ABIE41_RS07565at 1552.374 kb on + strand, within ABIE41_RS07570at 1552.375 kb on - strand, within ABIE41_RS07570at 1552.736 kb on - strandat 1552.778 kb on + strandat 1552.779 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM
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1,550,535 - -1.7
1,550,537 - -0.1
1,550,537 - +0.6
1,550,537 - -0.2
1,550,537 - +0.1
1,550,537 - +0.7
1,550,537 - +0.2
1,550,677 + ABIE41_RS07560 0.16 +0.9
1,550,677 + ABIE41_RS07560 0.16 -0.0
1,550,678 - ABIE41_RS07560 0.16 -0.2
1,550,678 - ABIE41_RS07560 0.16 +1.4
1,550,678 - ABIE41_RS07560 0.16 +0.9
1,550,678 - ABIE41_RS07560 0.16 +0.0
1,550,678 - ABIE41_RS07560 0.16 +0.2
1,550,678 - ABIE41_RS07560 0.16 +0.1
1,550,678 - ABIE41_RS07560 0.16 +0.1
1,550,681 - ABIE41_RS07560 0.17 -0.1
1,550,681 - ABIE41_RS07560 0.17 -0.1
1,550,681 - ABIE41_RS07560 0.17 +0.5
1,550,696 + ABIE41_RS07560 0.18 +0.9
1,550,737 + ABIE41_RS07560 0.21 +0.2
1,550,737 + ABIE41_RS07560 0.21 -0.4
1,550,769 + ABIE41_RS07560 0.23 +0.1
1,550,769 + ABIE41_RS07560 0.23 +0.3
1,550,769 + ABIE41_RS07560 0.23 +0.4
1,550,770 - ABIE41_RS07560 0.23 +0.5
1,551,837 + -1.0
1,551,837 + +0.1
1,551,838 - +0.6
1,551,838 - +0.1
1,551,840 - -0.0
1,551,870 + -0.7
1,551,871 - -0.1
1,551,896 + ABIE41_RS07565 0.15 -0.2
1,551,896 + ABIE41_RS07565 0.15 +0.8
1,551,896 + ABIE41_RS07565 0.15 +0.3
1,551,897 - ABIE41_RS07565 0.15 -0.7
1,551,897 - ABIE41_RS07565 0.15 +0.6
1,552,374 + ABIE41_RS07570 0.15 +0.7
1,552,375 - ABIE41_RS07570 0.16 +0.1
1,552,736 - +0.1
1,552,778 + +0.7
1,552,779 - -0.0

Or see this region's nucleotide sequence