Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07555

Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07550 and ABIE41_RS07555 are separated by 126 nucleotidesABIE41_RS07555 and ABIE41_RS07560 overlap by 1 nucleotides ABIE41_RS07550: ABIE41_RS07550 - divergent polysaccharide deacetylase family protein, at 1,547,785 to 1,548,999 _RS07550 ABIE41_RS07555: ABIE41_RS07555 - S41 family peptidase, at 1,549,126 to 1,550,454 _RS07555 ABIE41_RS07560: ABIE41_RS07560 - peptidoglycan DD-metalloendopeptidase family protein, at 1,550,454 to 1,551,827 _RS07560 Position (kb) 1549 1550 1551Strain fitness (log2 ratio) -1 0 1at 1548.191 kb on + strand, within ABIE41_RS07550at 1548.192 kb on - strand, within ABIE41_RS07550at 1548.521 kb on + strand, within ABIE41_RS07550at 1548.521 kb on + strand, within ABIE41_RS07550at 1548.521 kb on + strand, within ABIE41_RS07550at 1548.521 kb on + strand, within ABIE41_RS07550at 1548.521 kb on + strand, within ABIE41_RS07550at 1548.522 kb on - strand, within ABIE41_RS07550at 1548.522 kb on - strand, within ABIE41_RS07550at 1548.522 kb on - strand, within ABIE41_RS07550at 1549.057 kb on + strandat 1549.057 kb on + strandat 1549.057 kb on + strandat 1549.057 kb on + strandat 1549.057 kb on + strandat 1550.535 kb on - strandat 1550.537 kb on - strandat 1550.537 kb on - strandat 1550.537 kb on - strandat 1550.537 kb on - strandat 1550.537 kb on - strandat 1550.537 kb on - strandat 1550.677 kb on + strand, within ABIE41_RS07560at 1550.677 kb on + strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.678 kb on - strand, within ABIE41_RS07560at 1550.681 kb on - strand, within ABIE41_RS07560at 1550.681 kb on - strand, within ABIE41_RS07560at 1550.681 kb on - strand, within ABIE41_RS07560at 1550.696 kb on + strand, within ABIE41_RS07560at 1550.737 kb on + strand, within ABIE41_RS07560at 1550.737 kb on + strand, within ABIE41_RS07560at 1550.769 kb on + strand, within ABIE41_RS07560at 1550.769 kb on + strand, within ABIE41_RS07560at 1550.769 kb on + strand, within ABIE41_RS07560at 1550.770 kb on - strand, within ABIE41_RS07560

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM
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1,548,191 + ABIE41_RS07550 0.33 -0.2
1,548,192 - ABIE41_RS07550 0.33 -0.1
1,548,521 + ABIE41_RS07550 0.61 +0.3
1,548,521 + ABIE41_RS07550 0.61 -0.3
1,548,521 + ABIE41_RS07550 0.61 -0.5
1,548,521 + ABIE41_RS07550 0.61 +0.2
1,548,521 + ABIE41_RS07550 0.61 -0.1
1,548,522 - ABIE41_RS07550 0.61 +0.9
1,548,522 - ABIE41_RS07550 0.61 -0.3
1,548,522 - ABIE41_RS07550 0.61 +0.2
1,549,057 + +0.2
1,549,057 + +0.6
1,549,057 + +0.5
1,549,057 + +1.4
1,549,057 + +0.1
1,550,535 - -1.7
1,550,537 - -0.1
1,550,537 - +0.6
1,550,537 - -0.2
1,550,537 - +0.1
1,550,537 - +0.7
1,550,537 - +0.2
1,550,677 + ABIE41_RS07560 0.16 +0.9
1,550,677 + ABIE41_RS07560 0.16 -0.0
1,550,678 - ABIE41_RS07560 0.16 -0.2
1,550,678 - ABIE41_RS07560 0.16 +1.4
1,550,678 - ABIE41_RS07560 0.16 +0.9
1,550,678 - ABIE41_RS07560 0.16 +0.0
1,550,678 - ABIE41_RS07560 0.16 +0.2
1,550,678 - ABIE41_RS07560 0.16 +0.1
1,550,678 - ABIE41_RS07560 0.16 +0.1
1,550,681 - ABIE41_RS07560 0.17 -0.1
1,550,681 - ABIE41_RS07560 0.17 -0.1
1,550,681 - ABIE41_RS07560 0.17 +0.5
1,550,696 + ABIE41_RS07560 0.18 +0.9
1,550,737 + ABIE41_RS07560 0.21 +0.2
1,550,737 + ABIE41_RS07560 0.21 -0.4
1,550,769 + ABIE41_RS07560 0.23 +0.1
1,550,769 + ABIE41_RS07560 0.23 +0.3
1,550,769 + ABIE41_RS07560 0.23 +0.4
1,550,770 - ABIE41_RS07560 0.23 +0.5

Or see this region's nucleotide sequence