Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07550 and ABIE41_RS07555 are separated by 126 nucleotides ABIE41_RS07555 and ABIE41_RS07560 overlap by 1 nucleotides
ABIE41_RS07550: ABIE41_RS07550 - divergent polysaccharide deacetylase family protein, at 1,547,785 to 1,548,999
_RS07550
ABIE41_RS07555: ABIE41_RS07555 - S41 family peptidase, at 1,549,126 to 1,550,454
_RS07555
ABIE41_RS07560: ABIE41_RS07560 - peptidoglycan DD-metalloendopeptidase family protein, at 1,550,454 to 1,551,827
_RS07560
Position (kb)
1549
1550
1551 Strain fitness (log2 ratio)
-1
0
1 at 1548.191 kb on + strand, within ABIE41_RS07550 at 1548.192 kb on - strand, within ABIE41_RS07550 at 1548.521 kb on + strand, within ABIE41_RS07550 at 1548.521 kb on + strand, within ABIE41_RS07550 at 1548.521 kb on + strand, within ABIE41_RS07550 at 1548.521 kb on + strand, within ABIE41_RS07550 at 1548.521 kb on + strand, within ABIE41_RS07550 at 1548.522 kb on - strand, within ABIE41_RS07550 at 1548.522 kb on - strand, within ABIE41_RS07550 at 1548.522 kb on - strand, within ABIE41_RS07550 at 1549.057 kb on + strand at 1549.057 kb on + strand at 1549.057 kb on + strand at 1549.057 kb on + strand at 1549.057 kb on + strand at 1550.535 kb on - strand at 1550.537 kb on - strand at 1550.537 kb on - strand at 1550.537 kb on - strand at 1550.537 kb on - strand at 1550.537 kb on - strand at 1550.537 kb on - strand at 1550.677 kb on + strand, within ABIE41_RS07560 at 1550.677 kb on + strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.678 kb on - strand, within ABIE41_RS07560 at 1550.681 kb on - strand, within ABIE41_RS07560 at 1550.681 kb on - strand, within ABIE41_RS07560 at 1550.681 kb on - strand, within ABIE41_RS07560 at 1550.696 kb on + strand, within ABIE41_RS07560 at 1550.737 kb on + strand, within ABIE41_RS07560 at 1550.737 kb on + strand, within ABIE41_RS07560 at 1550.769 kb on + strand, within ABIE41_RS07560 at 1550.769 kb on + strand, within ABIE41_RS07560 at 1550.769 kb on + strand, within ABIE41_RS07560 at 1550.770 kb on - strand, within ABIE41_RS07560
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM remove 1,548,191 + ABIE41_RS07550 0.33 -0.2 1,548,192 - ABIE41_RS07550 0.33 -0.1 1,548,521 + ABIE41_RS07550 0.61 +0.3 1,548,521 + ABIE41_RS07550 0.61 -0.3 1,548,521 + ABIE41_RS07550 0.61 -0.5 1,548,521 + ABIE41_RS07550 0.61 +0.2 1,548,521 + ABIE41_RS07550 0.61 -0.1 1,548,522 - ABIE41_RS07550 0.61 +0.9 1,548,522 - ABIE41_RS07550 0.61 -0.3 1,548,522 - ABIE41_RS07550 0.61 +0.2 1,549,057 + +0.2 1,549,057 + +0.6 1,549,057 + +0.5 1,549,057 + +1.4 1,549,057 + +0.1 1,550,535 - -1.7 1,550,537 - -0.1 1,550,537 - +0.6 1,550,537 - -0.2 1,550,537 - +0.1 1,550,537 - +0.7 1,550,537 - +0.2 1,550,677 + ABIE41_RS07560 0.16 +0.9 1,550,677 + ABIE41_RS07560 0.16 -0.0 1,550,678 - ABIE41_RS07560 0.16 -0.2 1,550,678 - ABIE41_RS07560 0.16 +1.4 1,550,678 - ABIE41_RS07560 0.16 +0.9 1,550,678 - ABIE41_RS07560 0.16 +0.0 1,550,678 - ABIE41_RS07560 0.16 +0.2 1,550,678 - ABIE41_RS07560 0.16 +0.1 1,550,678 - ABIE41_RS07560 0.16 +0.1 1,550,681 - ABIE41_RS07560 0.17 -0.1 1,550,681 - ABIE41_RS07560 0.17 -0.1 1,550,681 - ABIE41_RS07560 0.17 +0.5 1,550,696 + ABIE41_RS07560 0.18 +0.9 1,550,737 + ABIE41_RS07560 0.21 +0.2 1,550,737 + ABIE41_RS07560 0.21 -0.4 1,550,769 + ABIE41_RS07560 0.23 +0.1 1,550,769 + ABIE41_RS07560 0.23 +0.3 1,550,769 + ABIE41_RS07560 0.23 +0.4 1,550,770 - ABIE41_RS07560 0.23 +0.5
Or see this region's nucleotide sequence