Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07550

Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07540 and ABIE41_RS07545 are separated by 27 nucleotidesABIE41_RS07545 and ABIE41_RS07550 overlap by 4 nucleotidesABIE41_RS07550 and ABIE41_RS07555 are separated by 126 nucleotides ABIE41_RS07540: ABIE41_RS07540 - transporter substrate-binding domain-containing protein, at 1,546,493 to 1,547,248 _RS07540 ABIE41_RS07545: ABIE41_RS07545 - RNA pyrophosphohydrolase, at 1,547,276 to 1,547,788 _RS07545 ABIE41_RS07550: ABIE41_RS07550 - divergent polysaccharide deacetylase family protein, at 1,547,785 to 1,548,999 _RS07550 ABIE41_RS07555: ABIE41_RS07555 - S41 family peptidase, at 1,549,126 to 1,550,454 _RS07555 Position (kb) 1547 1548 1549Strain fitness (log2 ratio) -1 0 1at 1546.827 kb on + strand, within ABIE41_RS07540at 1546.827 kb on + strand, within ABIE41_RS07540at 1546.828 kb on - strand, within ABIE41_RS07540at 1546.828 kb on - strand, within ABIE41_RS07540at 1546.914 kb on + strand, within ABIE41_RS07540at 1546.914 kb on + strand, within ABIE41_RS07540at 1546.914 kb on + strand, within ABIE41_RS07540at 1546.914 kb on + strand, within ABIE41_RS07540at 1546.914 kb on + strand, within ABIE41_RS07540at 1546.915 kb on - strand, within ABIE41_RS07540at 1546.915 kb on - strand, within ABIE41_RS07540at 1546.915 kb on - strand, within ABIE41_RS07540at 1546.915 kb on - strand, within ABIE41_RS07540at 1546.935 kb on + strand, within ABIE41_RS07540at 1547.043 kb on + strand, within ABIE41_RS07540at 1547.044 kb on - strand, within ABIE41_RS07540at 1547.044 kb on - strand, within ABIE41_RS07540at 1547.044 kb on - strand, within ABIE41_RS07540at 1547.319 kb on + strandat 1547.760 kb on + strandat 1548.191 kb on + strand, within ABIE41_RS07550at 1548.192 kb on - strand, within ABIE41_RS07550at 1548.521 kb on + strand, within ABIE41_RS07550at 1548.521 kb on + strand, within ABIE41_RS07550at 1548.521 kb on + strand, within ABIE41_RS07550at 1548.521 kb on + strand, within ABIE41_RS07550at 1548.521 kb on + strand, within ABIE41_RS07550at 1548.522 kb on - strand, within ABIE41_RS07550at 1548.522 kb on - strand, within ABIE41_RS07550at 1548.522 kb on - strand, within ABIE41_RS07550at 1549.057 kb on + strandat 1549.057 kb on + strandat 1549.057 kb on + strandat 1549.057 kb on + strandat 1549.057 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM
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1,546,827 + ABIE41_RS07540 0.44 +0.6
1,546,827 + ABIE41_RS07540 0.44 +0.1
1,546,828 - ABIE41_RS07540 0.44 -0.1
1,546,828 - ABIE41_RS07540 0.44 -0.2
1,546,914 + ABIE41_RS07540 0.56 +0.9
1,546,914 + ABIE41_RS07540 0.56 +1.1
1,546,914 + ABIE41_RS07540 0.56 +0.2
1,546,914 + ABIE41_RS07540 0.56 +0.1
1,546,914 + ABIE41_RS07540 0.56 +0.7
1,546,915 - ABIE41_RS07540 0.56 +0.1
1,546,915 - ABIE41_RS07540 0.56 +1.5
1,546,915 - ABIE41_RS07540 0.56 +1.2
1,546,915 - ABIE41_RS07540 0.56 +0.6
1,546,935 + ABIE41_RS07540 0.58 -0.0
1,547,043 + ABIE41_RS07540 0.73 -0.7
1,547,044 - ABIE41_RS07540 0.73 +0.3
1,547,044 - ABIE41_RS07540 0.73 +0.2
1,547,044 - ABIE41_RS07540 0.73 +0.0
1,547,319 + -0.3
1,547,760 + -1.0
1,548,191 + ABIE41_RS07550 0.33 -0.2
1,548,192 - ABIE41_RS07550 0.33 -0.1
1,548,521 + ABIE41_RS07550 0.61 +0.3
1,548,521 + ABIE41_RS07550 0.61 -0.3
1,548,521 + ABIE41_RS07550 0.61 -0.5
1,548,521 + ABIE41_RS07550 0.61 +0.2
1,548,521 + ABIE41_RS07550 0.61 -0.1
1,548,522 - ABIE41_RS07550 0.61 +0.9
1,548,522 - ABIE41_RS07550 0.61 -0.3
1,548,522 - ABIE41_RS07550 0.61 +0.2
1,549,057 + +0.2
1,549,057 + +0.6
1,549,057 + +0.5
1,549,057 + +1.4
1,549,057 + +0.1

Or see this region's nucleotide sequence