Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06050

Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS06040 and ABIE41_RS06045 are separated by 31 nucleotidesABIE41_RS06045 and ABIE41_RS06050 are separated by 230 nucleotidesABIE41_RS06050 and ABIE41_RS06055 are separated by 268 nucleotides ABIE41_RS06040: ABIE41_RS06040 - amidohydrolase family protein, at 1,245,097 to 1,246,332 _RS06040 ABIE41_RS06045: ABIE41_RS06045 - DUF2938 domain-containing protein, at 1,246,364 to 1,246,840 _RS06045 ABIE41_RS06050: ABIE41_RS06050 - ROK family protein, at 1,247,071 to 1,248,219 _RS06050 ABIE41_RS06055: ABIE41_RS06055 - DUF3772 domain-containing protein, at 1,248,488 to 1,251,106 _RS06055 Position (kb) 1247 1248 1249Strain fitness (log2 ratio) -2 -1 0 1 2at 1246.620 kb on + strand, within ABIE41_RS06045at 1246.621 kb on - strand, within ABIE41_RS06045at 1246.621 kb on - strand, within ABIE41_RS06045at 1247.167 kb on + strandat 1247.167 kb on + strandat 1247.168 kb on - strandat 1247.862 kb on + strand, within ABIE41_RS06050at 1248.124 kb on + strandat 1248.124 kb on + strandat 1248.124 kb on + strandat 1248.125 kb on - strandat 1248.125 kb on - strandat 1248.125 kb on - strandat 1248.125 kb on - strandat 1248.227 kb on + strandat 1248.228 kb on - strandat 1248.228 kb on - strandat 1249.091 kb on + strand, within ABIE41_RS06055at 1249.091 kb on + strand, within ABIE41_RS06055at 1249.091 kb on + strand, within ABIE41_RS06055at 1249.091 kb on + strand, within ABIE41_RS06055at 1249.092 kb on - strand, within ABIE41_RS06055at 1249.092 kb on - strand, within ABIE41_RS06055at 1249.092 kb on - strand, within ABIE41_RS06055at 1249.092 kb on - strand, within ABIE41_RS06055at 1249.092 kb on - strand, within ABIE41_RS06055at 1249.092 kb on - strand, within ABIE41_RS06055at 1249.092 kb on - strand, within ABIE41_RS06055at 1249.092 kb on - strand, within ABIE41_RS06055at 1249.187 kb on + strand, within ABIE41_RS06055at 1249.187 kb on + strand, within ABIE41_RS06055at 1249.187 kb on + strand, within ABIE41_RS06055at 1249.187 kb on + strand, within ABIE41_RS06055at 1249.187 kb on + strand, within ABIE41_RS06055at 1249.187 kb on + strand, within ABIE41_RS06055at 1249.187 kb on + strand, within ABIE41_RS06055at 1249.187 kb on + strand, within ABIE41_RS06055at 1249.187 kb on + strand, within ABIE41_RS06055at 1249.188 kb on - strand, within ABIE41_RS06055at 1249.188 kb on - strand, within ABIE41_RS06055at 1249.188 kb on - strand, within ABIE41_RS06055at 1249.188 kb on - strand, within ABIE41_RS06055at 1249.188 kb on - strand, within ABIE41_RS06055at 1249.190 kb on + strand, within ABIE41_RS06055at 1249.190 kb on + strand, within ABIE41_RS06055at 1249.190 kb on + strand, within ABIE41_RS06055at 1249.190 kb on + strand, within ABIE41_RS06055at 1249.190 kb on + strand, within ABIE41_RS06055at 1249.190 kb on + strand, within ABIE41_RS06055at 1249.190 kb on + strand, within ABIE41_RS06055at 1249.191 kb on - strand, within ABIE41_RS06055at 1249.191 kb on - strand, within ABIE41_RS06055at 1249.191 kb on - strand, within ABIE41_RS06055at 1249.191 kb on - strand, within ABIE41_RS06055at 1249.191 kb on - strand, within ABIE41_RS06055at 1249.205 kb on + strand, within ABIE41_RS06055

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM
remove
1,246,620 + ABIE41_RS06045 0.54 +0.3
1,246,621 - ABIE41_RS06045 0.54 -0.0
1,246,621 - ABIE41_RS06045 0.54 +0.1
1,247,167 + -0.5
1,247,167 + +0.6
1,247,168 - -0.2
1,247,862 + ABIE41_RS06050 0.69 -0.0
1,248,124 + -0.3
1,248,124 + -1.9
1,248,124 + +0.1
1,248,125 - +0.7
1,248,125 - +1.1
1,248,125 - -0.1
1,248,125 - -0.1
1,248,227 + -0.2
1,248,228 - -0.9
1,248,228 - -0.4
1,249,091 + ABIE41_RS06055 0.23 +1.6
1,249,091 + ABIE41_RS06055 0.23 +0.4
1,249,091 + ABIE41_RS06055 0.23 +1.5
1,249,091 + ABIE41_RS06055 0.23 +2.1
1,249,092 - ABIE41_RS06055 0.23 +0.9
1,249,092 - ABIE41_RS06055 0.23 +0.4
1,249,092 - ABIE41_RS06055 0.23 +1.0
1,249,092 - ABIE41_RS06055 0.23 +0.5
1,249,092 - ABIE41_RS06055 0.23 +0.7
1,249,092 - ABIE41_RS06055 0.23 +0.9
1,249,092 - ABIE41_RS06055 0.23 +0.3
1,249,092 - ABIE41_RS06055 0.23 -0.3
1,249,187 + ABIE41_RS06055 0.27 +0.1
1,249,187 + ABIE41_RS06055 0.27 +0.1
1,249,187 + ABIE41_RS06055 0.27 +0.8
1,249,187 + ABIE41_RS06055 0.27 +0.1
1,249,187 + ABIE41_RS06055 0.27 +0.4
1,249,187 + ABIE41_RS06055 0.27 +0.8
1,249,187 + ABIE41_RS06055 0.27 +0.4
1,249,187 + ABIE41_RS06055 0.27 -0.0
1,249,187 + ABIE41_RS06055 0.27 +0.1
1,249,188 - ABIE41_RS06055 0.27 +0.1
1,249,188 - ABIE41_RS06055 0.27 +1.6
1,249,188 - ABIE41_RS06055 0.27 +0.3
1,249,188 - ABIE41_RS06055 0.27 +0.7
1,249,188 - ABIE41_RS06055 0.27 +0.5
1,249,190 + ABIE41_RS06055 0.27 +0.1
1,249,190 + ABIE41_RS06055 0.27 +0.1
1,249,190 + ABIE41_RS06055 0.27 +1.1
1,249,190 + ABIE41_RS06055 0.27 +0.8
1,249,190 + ABIE41_RS06055 0.27 -0.1
1,249,190 + ABIE41_RS06055 0.27 +0.2
1,249,190 + ABIE41_RS06055 0.27 +0.6
1,249,191 - ABIE41_RS06055 0.27 +0.5
1,249,191 - ABIE41_RS06055 0.27 -0.1
1,249,191 - ABIE41_RS06055 0.27 -0.2
1,249,191 - ABIE41_RS06055 0.27 +0.6
1,249,191 - ABIE41_RS06055 0.27 +1.4
1,249,205 + ABIE41_RS06055 0.27 +0.9

Or see this region's nucleotide sequence