Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06040

Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06030 and ABIE41_RS06035 overlap by 1 nucleotidesABIE41_RS06035 and ABIE41_RS06040 are separated by 119 nucleotidesABIE41_RS06040 and ABIE41_RS06045 are separated by 31 nucleotidesABIE41_RS06045 and ABIE41_RS06050 are separated by 230 nucleotides ABIE41_RS06030: ABIE41_RS06030 - cupin domain-containing protein, at 1,243,752 to 1,244,210 _RS06030 ABIE41_RS06035: ABIE41_RS06035 - GNAT family N-acetyltransferase, at 1,244,210 to 1,244,977 _RS06035 ABIE41_RS06040: ABIE41_RS06040 - amidohydrolase family protein, at 1,245,097 to 1,246,332 _RS06040 ABIE41_RS06045: ABIE41_RS06045 - DUF2938 domain-containing protein, at 1,246,364 to 1,246,840 _RS06045 ABIE41_RS06050: ABIE41_RS06050 - ROK family protein, at 1,247,071 to 1,248,219 _RS06050 Position (kb) 1245 1246 1247Strain fitness (log2 ratio) -2 -1 0 1 2at 1244.498 kb on + strand, within ABIE41_RS06035at 1244.499 kb on - strand, within ABIE41_RS06035at 1244.499 kb on - strand, within ABIE41_RS06035at 1244.499 kb on - strand, within ABIE41_RS06035at 1244.729 kb on + strand, within ABIE41_RS06035at 1244.871 kb on - strand, within ABIE41_RS06035at 1244.871 kb on - strand, within ABIE41_RS06035at 1244.871 kb on - strand, within ABIE41_RS06035at 1244.912 kb on + strandat 1244.913 kb on - strandat 1244.939 kb on + strandat 1244.940 kb on - strandat 1244.945 kb on + strandat 1245.350 kb on + strand, within ABIE41_RS06040at 1245.350 kb on + strand, within ABIE41_RS06040at 1245.350 kb on + strand, within ABIE41_RS06040at 1245.350 kb on + strand, within ABIE41_RS06040at 1245.351 kb on - strand, within ABIE41_RS06040at 1245.351 kb on - strand, within ABIE41_RS06040at 1245.351 kb on - strand, within ABIE41_RS06040at 1245.351 kb on - strand, within ABIE41_RS06040at 1245.351 kb on - strand, within ABIE41_RS06040at 1245.351 kb on - strand, within ABIE41_RS06040at 1245.383 kb on + strand, within ABIE41_RS06040at 1245.383 kb on + strand, within ABIE41_RS06040at 1245.383 kb on + strand, within ABIE41_RS06040at 1245.383 kb on + strand, within ABIE41_RS06040at 1245.384 kb on - strand, within ABIE41_RS06040at 1245.384 kb on - strand, within ABIE41_RS06040at 1245.384 kb on - strand, within ABIE41_RS06040at 1245.384 kb on - strand, within ABIE41_RS06040at 1245.384 kb on - strand, within ABIE41_RS06040at 1245.384 kb on - strand, within ABIE41_RS06040at 1245.512 kb on + strand, within ABIE41_RS06040at 1245.512 kb on + strand, within ABIE41_RS06040at 1245.512 kb on + strand, within ABIE41_RS06040at 1245.513 kb on - strand, within ABIE41_RS06040at 1245.513 kb on - strand, within ABIE41_RS06040at 1245.642 kb on + strand, within ABIE41_RS06040at 1245.644 kb on + strand, within ABIE41_RS06040at 1245.644 kb on + strand, within ABIE41_RS06040at 1245.644 kb on + strand, within ABIE41_RS06040at 1245.644 kb on + strand, within ABIE41_RS06040at 1245.644 kb on + strand, within ABIE41_RS06040at 1245.644 kb on + strand, within ABIE41_RS06040at 1245.644 kb on + strand, within ABIE41_RS06040at 1245.645 kb on - strand, within ABIE41_RS06040at 1245.645 kb on - strand, within ABIE41_RS06040at 1245.645 kb on - strand, within ABIE41_RS06040at 1245.645 kb on - strand, within ABIE41_RS06040at 1245.645 kb on - strand, within ABIE41_RS06040at 1245.645 kb on - strand, within ABIE41_RS06040at 1245.645 kb on - strand, within ABIE41_RS06040at 1245.645 kb on - strand, within ABIE41_RS06040at 1245.645 kb on - strand, within ABIE41_RS06040at 1245.645 kb on - strand, within ABIE41_RS06040at 1245.662 kb on + strand, within ABIE41_RS06040at 1245.662 kb on + strand, within ABIE41_RS06040at 1245.662 kb on + strand, within ABIE41_RS06040at 1245.662 kb on + strand, within ABIE41_RS06040at 1245.662 kb on + strand, within ABIE41_RS06040at 1245.663 kb on - strand, within ABIE41_RS06040at 1245.663 kb on - strand, within ABIE41_RS06040at 1245.663 kb on - strand, within ABIE41_RS06040at 1245.663 kb on - strand, within ABIE41_RS06040at 1245.663 kb on - strand, within ABIE41_RS06040at 1245.664 kb on - strand, within ABIE41_RS06040at 1245.897 kb on - strand, within ABIE41_RS06040at 1246.620 kb on + strand, within ABIE41_RS06045at 1246.621 kb on - strand, within ABIE41_RS06045at 1246.621 kb on - strand, within ABIE41_RS06045at 1247.167 kb on + strandat 1247.167 kb on + strandat 1247.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM
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1,244,498 + ABIE41_RS06035 0.38 +0.5
1,244,499 - ABIE41_RS06035 0.38 +2.7
1,244,499 - ABIE41_RS06035 0.38 -1.1
1,244,499 - ABIE41_RS06035 0.38 +0.5
1,244,729 + ABIE41_RS06035 0.68 +0.1
1,244,871 - ABIE41_RS06035 0.86 +0.2
1,244,871 - ABIE41_RS06035 0.86 +0.4
1,244,871 - ABIE41_RS06035 0.86 +0.7
1,244,912 + -0.4
1,244,913 - +0.7
1,244,939 + +0.4
1,244,940 - +0.1
1,244,945 + +0.1
1,245,350 + ABIE41_RS06040 0.20 +1.3
1,245,350 + ABIE41_RS06040 0.20 +1.7
1,245,350 + ABIE41_RS06040 0.20 +1.4
1,245,350 + ABIE41_RS06040 0.20 +0.9
1,245,351 - ABIE41_RS06040 0.21 -0.3
1,245,351 - ABIE41_RS06040 0.21 +0.6
1,245,351 - ABIE41_RS06040 0.21 +0.4
1,245,351 - ABIE41_RS06040 0.21 -0.2
1,245,351 - ABIE41_RS06040 0.21 +1.6
1,245,351 - ABIE41_RS06040 0.21 +0.6
1,245,383 + ABIE41_RS06040 0.23 -0.4
1,245,383 + ABIE41_RS06040 0.23 +1.0
1,245,383 + ABIE41_RS06040 0.23 -0.9
1,245,383 + ABIE41_RS06040 0.23 -0.4
1,245,384 - ABIE41_RS06040 0.23 -0.3
1,245,384 - ABIE41_RS06040 0.23 -0.7
1,245,384 - ABIE41_RS06040 0.23 -1.1
1,245,384 - ABIE41_RS06040 0.23 +0.3
1,245,384 - ABIE41_RS06040 0.23 -0.1
1,245,384 - ABIE41_RS06040 0.23 -0.1
1,245,512 + ABIE41_RS06040 0.34 -0.1
1,245,512 + ABIE41_RS06040 0.34 +0.1
1,245,512 + ABIE41_RS06040 0.34 -1.0
1,245,513 - ABIE41_RS06040 0.34 +0.1
1,245,513 - ABIE41_RS06040 0.34 -0.0
1,245,642 + ABIE41_RS06040 0.44 -0.1
1,245,644 + ABIE41_RS06040 0.44 -0.0
1,245,644 + ABIE41_RS06040 0.44 -0.6
1,245,644 + ABIE41_RS06040 0.44 -0.2
1,245,644 + ABIE41_RS06040 0.44 +0.3
1,245,644 + ABIE41_RS06040 0.44 -0.3
1,245,644 + ABIE41_RS06040 0.44 +0.3
1,245,644 + ABIE41_RS06040 0.44 +0.0
1,245,645 - ABIE41_RS06040 0.44 +0.6
1,245,645 - ABIE41_RS06040 0.44 -0.3
1,245,645 - ABIE41_RS06040 0.44 +0.2
1,245,645 - ABIE41_RS06040 0.44 +1.7
1,245,645 - ABIE41_RS06040 0.44 -0.3
1,245,645 - ABIE41_RS06040 0.44 +0.8
1,245,645 - ABIE41_RS06040 0.44 +0.4
1,245,645 - ABIE41_RS06040 0.44 -0.1
1,245,645 - ABIE41_RS06040 0.44 +0.8
1,245,645 - ABIE41_RS06040 0.44 -0.7
1,245,662 + ABIE41_RS06040 0.46 -0.1
1,245,662 + ABIE41_RS06040 0.46 +0.0
1,245,662 + ABIE41_RS06040 0.46 +0.3
1,245,662 + ABIE41_RS06040 0.46 +0.0
1,245,662 + ABIE41_RS06040 0.46 +0.1
1,245,663 - ABIE41_RS06040 0.46 -2.0
1,245,663 - ABIE41_RS06040 0.46 -0.0
1,245,663 - ABIE41_RS06040 0.46 -2.0
1,245,663 - ABIE41_RS06040 0.46 +0.4
1,245,663 - ABIE41_RS06040 0.46 +0.1
1,245,664 - ABIE41_RS06040 0.46 +0.6
1,245,897 - ABIE41_RS06040 0.65 +0.4
1,246,620 + ABIE41_RS06045 0.54 +0.3
1,246,621 - ABIE41_RS06045 0.54 -0.0
1,246,621 - ABIE41_RS06045 0.54 +0.1
1,247,167 + -0.5
1,247,167 + +0.6
1,247,168 - -0.2

Or see this region's nucleotide sequence