Strain Fitness in Pseudomonas sp. RS175 around PFR28_04469

Experiment: sn-glycero-3-phosphocholine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sn-glycero-3-phosphocholine (C)
5,091,346	+		PFR28_04467	0.86	+0.4
5,091,346	+		PFR28_04467	0.86	+6.0
5,091,373	+		PFR28_04467	0.87	-1.7
5,091,373	+		PFR28_04467	0.87	+0.9
5,091,373	+		PFR28_04467	0.87	+0.9
5,091,373	+		PFR28_04467	0.87	-1.0
5,091,373	+		PFR28_04467	0.87	+0.1
5,091,373	+		PFR28_04467	0.87	+0.5
5,091,373	+		PFR28_04467	0.87	-0.5
5,091,374	-		PFR28_04467	0.87	-0.6
5,091,374	-		PFR28_04467	0.87	-0.4
5,091,374	-		PFR28_04467	0.87	+1.3
5,091,374	-		PFR28_04467	0.87	+1.4
5,091,374	-		PFR28_04467	0.87	-0.1
5,091,391	+		PFR28_04467	0.88	-0.2
5,091,392	-		PFR28_04467	0.88	+0.2
5,091,458	-		PFR28_04467	0.89	+0.6
5,091,458	-		PFR28_04467	0.89	-1.0
5,091,600	+				+0.1
5,091,600	+				+1.5
5,091,600	+				-1.9
5,091,601	-				-0.4
5,091,601	-				+1.2
5,091,601	-				-1.2
5,091,601	-				+0.8
5,091,601	-				+0.9
5,091,629	-				-0.2
5,091,629	-				-0.6
5,091,630	+				-0.9
5,091,630	+				+0.2
5,091,655	+				+0.6
5,091,829	+				-0.5
5,091,829	+				-2.5
5,091,829	+				-0.9
5,091,830	-				-0.4
5,091,830	-				+1.7
5,091,830	-				+0.7
5,091,830	-				-1.2
5,091,830	-				-3.5
5,091,830	-				+0.5
5,091,875	-				-1.3
5,092,264	+				-1.5
5,092,264	+				+0.4
5,092,264	+				-3.1
5,092,264	+				+1.8
5,092,264	+				-0.1
5,092,265	-				+0.1
5,092,265	-				+0.9
5,092,265	-				+0.3
5,092,265	-				-2.8
5,092,265	-				-0.5
5,092,304	+				+0.7
5,092,304	+				-0.5
5,092,305	-				+1.5
5,092,305	-				+0.1
5,092,311	+				+0.3
5,092,312	-				-0.3
5,092,312	-				-1.4
5,092,568	+				-3.3
5,093,294	-		PFR28_04469	0.22	-0.4
5,093,616	+		PFR28_04469	0.30	-0.3
5,093,617	-		PFR28_04469	0.30	+0.6
5,093,617	-		PFR28_04469	0.30	+2.8
5,093,617	-		PFR28_04469	0.30	+1.4
5,093,617	-		PFR28_04469	0.30	-0.1
5,093,617	-		PFR28_04469	0.30	+1.7
5,093,630	-		PFR28_04469	0.30	+0.6
5,093,678	+		PFR28_04469	0.31	-1.8
5,093,678	+		PFR28_04469	0.31	-1.2
5,093,679	-		PFR28_04469	0.31	+0.2
5,093,695	+		PFR28_04469	0.32	-1.6
5,093,695	+		PFR28_04469	0.32	-0.4
5,093,696	-		PFR28_04469	0.32	+0.6
5,093,696	-		PFR28_04469	0.32	+0.3
5,093,771	-		PFR28_04469	0.33	-2.2
5,093,771	-		PFR28_04469	0.33	-3.2
5,093,771	-		PFR28_04469	0.33	-0.6
5,093,836	+		PFR28_04469	0.35	+0.6
5,093,836	+		PFR28_04469	0.35	+1.6
5,093,893	+		PFR28_04469	0.36	-0.3
5,093,893	+		PFR28_04469	0.36	+0.6
5,093,893	+		PFR28_04469	0.36	+0.9
5,093,894	-		PFR28_04469	0.36	-0.8
5,093,962	+		PFR28_04469	0.38	-2.2
5,093,962	+		PFR28_04469	0.38	-2.2
5,093,975	-		PFR28_04469	0.38	+0.2
5,094,050	-		PFR28_04469	0.40	+0.8
5,094,158	-		PFR28_04469	0.42	-0.5
5,094,158	-		PFR28_04469	0.42	+0.3
5,094,158	-		PFR28_04469	0.42	-3.8
5,094,158	-		PFR28_04469	0.42	+1.7
5,094,163	+		PFR28_04469	0.42	+0.3
5,094,163	+		PFR28_04469	0.42	-0.2
5,094,163	+		PFR28_04469	0.42	-0.0
5,094,163	+		PFR28_04469	0.42	+0.8
5,094,163	+		PFR28_04469	0.42	+0.2
5,094,163	+		PFR28_04469	0.42	-2.6
5,094,164	-		PFR28_04469	0.42	-2.3
5,094,164	-		PFR28_04469	0.42	+1.2
5,094,164	-		PFR28_04469	0.42	-1.2
5,094,256	+		PFR28_04469	0.45	+0.8
5,094,256	+		PFR28_04469	0.45	-0.3
5,094,257	-		PFR28_04469	0.45	-0.9
5,094,286	+		PFR28_04469	0.45	-0.0
5,094,287	-		PFR28_04469	0.45	-0.7
5,094,481	+		PFR28_04469	0.50	+0.1
5,094,481	+		PFR28_04469	0.50	+0.3
5,094,482	-		PFR28_04469	0.50	-2.4
5,094,541	-		PFR28_04469	0.51	+0.4
5,094,541	-		PFR28_04469	0.51	-0.0
5,094,544	+		PFR28_04469	0.51	-0.9
5,094,544	+		PFR28_04469	0.51	+0.1
5,094,545	-		PFR28_04469	0.51	-1.7
5,094,545	-		PFR28_04469	0.51	-0.4
5,094,602	-		PFR28_04469	0.52	+0.5
5,094,664	+		PFR28_04469	0.54	-0.9
5,094,665	-		PFR28_04469	0.54	-2.0
5,094,733	+		PFR28_04469	0.55	+0.3
5,094,742	+		PFR28_04469	0.56	+0.2
5,094,742	+		PFR28_04469	0.56	-1.8
5,094,742	+		PFR28_04469	0.56	-1.9
5,094,742	+		PFR28_04469	0.56	-1.5
5,094,742	+		PFR28_04469	0.56	+3.0
5,094,743	-		PFR28_04469	0.56	+0.4
5,094,743	-		PFR28_04469	0.56	+0.1
5,094,853	+		PFR28_04469	0.58	+0.1
5,094,853	+		PFR28_04469	0.58	+1.7
5,094,853	+		PFR28_04469	0.58	+1.0
5,094,854	-		PFR28_04469	0.58	+0.5
5,094,859	+		PFR28_04469	0.58	+0.4
5,094,860	-		PFR28_04469	0.58	+0.2
5,094,860	-		PFR28_04469	0.58	+0.8
5,095,024	+		PFR28_04469	0.62	-3.0
5,095,025	-		PFR28_04469	0.62	-1.5
5,095,030	+		PFR28_04469	0.62	+0.1
5,095,030	+		PFR28_04469	0.62	-0.7
5,095,031	-		PFR28_04469	0.62	-3.0
5,095,031	-		PFR28_04469	0.62	-0.2
5,095,031	-		PFR28_04469	0.62	-2.0
5,095,050	+		PFR28_04469	0.63	-1.5
5,095,105	+		PFR28_04469	0.64	+0.1
5,095,165	+		PFR28_04469	0.65	-0.6
5,095,165	+		PFR28_04469	0.65	+0.5
5,095,166	-		PFR28_04469	0.65	+0.4
5,095,166	-		PFR28_04469	0.65	-0.1
5,095,166	-		PFR28_04469	0.65	+0.1
5,095,228	+		PFR28_04469	0.67	-0.4
5,095,229	-		PFR28_04469	0.67	-0.1
5,095,229	-		PFR28_04469	0.67	-1.4
5,095,316	+		PFR28_04469	0.69	-1.7
5,095,316	+		PFR28_04469	0.69	-0.3
5,095,316	+		PFR28_04469	0.69	-0.9
5,095,316	+		PFR28_04469	0.69	+0.1
5,095,316	+		PFR28_04469	0.69	-1.1
5,095,316	+		PFR28_04469	0.69	-1.3
5,095,316	+		PFR28_04469	0.69	-1.0
5,095,316	+		PFR28_04469	0.69	+0.1
5,095,316	+		PFR28_04469	0.69	-1.2
5,095,317	-		PFR28_04469	0.69	-0.5
5,095,351	+		PFR28_04469	0.70	-0.3
5,095,351	+		PFR28_04469	0.70	+0.1
5,095,352	-		PFR28_04469	0.70	-1.0
5,095,513	+		PFR28_04469	0.73	-1.6
5,095,513	+		PFR28_04469	0.73	-2.4
5,095,513	+		PFR28_04469	0.73	+0.1
5,095,654	+		PFR28_04469	0.77	+0.7
5,095,655	-		PFR28_04469	0.77	+0.7
5,095,655	-		PFR28_04469	0.77	+1.1
5,095,655	-		PFR28_04469	0.77	-0.6
5,095,655	-		PFR28_04469	0.77	+0.0
5,095,676	-		PFR28_04469	0.77	-0.4
5,095,739	-		PFR28_04469	0.79	-1.7
5,095,739	-		PFR28_04469	0.79	-1.0
5,095,739	-		PFR28_04469	0.79	+0.8
5,095,739	-		PFR28_04469	0.79	-2.7
5,095,801	+		PFR28_04469	0.80	-0.6
5,095,801	+		PFR28_04469	0.80	-0.0
5,095,801	+		PFR28_04469	0.80	-0.3
5,095,802	-		PFR28_04469	0.80	+0.4
5,095,802	-		PFR28_04469	0.80	+1.4
5,095,930	+		PFR28_04469	0.83	+1.7
5,095,930	+		PFR28_04469	0.83	-1.2
5,095,930	+		PFR28_04469	0.83	-0.5
5,095,931	-		PFR28_04469	0.83	-1.3
5,095,931	-		PFR28_04469	0.83	-0.9
5,095,931	-		PFR28_04469	0.83	+1.4
5,095,936	+		PFR28_04469	0.83	-3.8
5,095,937	-		PFR28_04469	0.83	-0.9
5,095,951	+		PFR28_04469	0.83	+1.0
5,095,951	+		PFR28_04469	0.83	+0.3
5,095,951	+		PFR28_04469	0.83	+1.8
5,095,951	+		PFR28_04469	0.83	+0.6
5,095,951	+		PFR28_04469	0.83	-0.0
5,095,951	+		PFR28_04469	0.83	+1.9
5,095,952	-		PFR28_04469	0.83	-0.2
5,095,952	-		PFR28_04469	0.83	-1.1
5,095,952	-		PFR28_04469	0.83	+1.6
5,095,952	-		PFR28_04469	0.83	-1.3
5,095,952	-		PFR28_04469	0.83	+0.5
5,096,003	-		PFR28_04469	0.85	-0.4
5,096,078	-		PFR28_04469	0.86	-0.3
5,096,119	+		PFR28_04469	0.87	+0.8
5,096,119	+		PFR28_04469	0.87	+1.4
5,096,120	-		PFR28_04469	0.87	+1.0
5,096,120	-		PFR28_04469	0.87	-1.7
5,096,120	-		PFR28_04469	0.87	+2.4
5,096,120	-		PFR28_04469	0.87	-1.8
5,096,120	-		PFR28_04469	0.87	-1.0
5,096,120	-		PFR28_04469	0.87	+0.5
5,096,122	+		PFR28_04469	0.87	+1.0
5,096,122	+		PFR28_04469	0.87	-0.2
5,096,122	+		PFR28_04469	0.87	-2.3
5,096,122	+		PFR28_04469	0.87	-0.4
5,096,123	-		PFR28_04469	0.87	+0.2
5,096,123	-		PFR28_04469	0.87	-1.0
5,096,123	-		PFR28_04469	0.87	+1.0
5,096,123	-		PFR28_04469	0.87	+0.9
5,096,123	-		PFR28_04469	0.87	-3.0
5,096,123	-		PFR28_04469	0.87	-2.5
5,096,158	+		PFR28_04469	0.88	-2.0
5,096,158	+		PFR28_04469	0.88	+0.5
5,096,185	+		PFR28_04469	0.89	-3.0
5,096,185	+		PFR28_04469	0.89	+0.7
5,096,186	-		PFR28_04469	0.89	+0.5
5,096,186	-		PFR28_04469	0.89	-1.9
5,096,186	-		PFR28_04469	0.89	-0.8
5,096,186	-		PFR28_04469	0.89	+1.7
5,096,186	-		PFR28_04469	0.89	+1.5
5,096,203	+		PFR28_04469	0.89	-0.9
5,096,203	+		PFR28_04469	0.89	-0.3
5,096,203	+		PFR28_04469	0.89	-0.7
5,096,204	-		PFR28_04469	0.89	-0.9
5,096,325	+				-0.9
5,096,325	+				+1.3
5,096,353	+				-3.2
5,096,354	-				-1.5
5,096,354	-				-1.7
5,096,360	-				-0.1
5,096,437	+				-1.7
5,096,437	+				+0.5
5,096,437	+				+0.3
5,096,437	+				-1.3
5,096,437	+				+0.5
5,096,437	+				+0.4
5,096,437	+				-1.6
5,096,437	+				-1.4
5,096,437	+				+1.1
5,096,438	-				+0.4
5,096,438	-				-1.8
5,096,438	-				-2.3
5,096,438	-				-1.9
5,096,438	-				+0.3
5,096,578	+				-0.0
5,096,579	-				+0.8
5,096,579	-				-0.8
5,096,616	+				+0.9
5,096,639	+				+1.3
5,096,671	+				+0.2
5,096,671	+				+0.7
5,096,672	-				+1.2
5,096,672	-				+1.7
5,096,672	-				+1.1
5,097,161	+				-1.6
5,097,161	+				-1.8
5,097,161	+				+1.1
5,097,162	-				+1.2
5,097,162	-				+0.3
5,097,375	+				+0.9
5,097,376	-				+0.5
5,097,396	+				+0.8
5,097,510	+		PFR28_04471	0.15	-0.8
5,097,510	+		PFR28_04471	0.15	+0.3
5,097,510	+		PFR28_04471	0.15	-1.1
5,097,510	+		PFR28_04471	0.15	+0.9
5,097,511	-		PFR28_04471	0.15	-1.0
5,097,511	-		PFR28_04471	0.15	+1.3
5,097,511	-		PFR28_04471	0.15	-0.3
5,097,511	-		PFR28_04471	0.15	+1.0