Strain Fitness in Pseudomonas sp. RS175 around PFR28_04131

Experiment: sn-glycero-3-phosphocholine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04130 and PFR28_04131 are separated by 78 nucleotidesPFR28_04131 and PFR28_04132 are separated by 173 nucleotides PFR28_04130: PFR28_04130 - Formyltetrahydrofolate deformylase, at 4,718,105 to 4,718,962 _04130 PFR28_04131: PFR28_04131 - Sarcosine oxidase subunit gamma, at 4,719,041 to 4,719,673 _04131 PFR28_04132: PFR28_04132 - Sarcosine oxidase subunit alpha, at 4,719,847 to 4,722,864 _04132 Position (kb) 4719 4720Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4718.106 kb on + strandat 4718.119 kb on + strandat 4718.119 kb on + strandat 4718.120 kb on - strandat 4718.120 kb on - strandat 4718.157 kb on + strandat 4718.292 kb on + strand, within PFR28_04130at 4718.292 kb on + strand, within PFR28_04130at 4718.292 kb on + strand, within PFR28_04130at 4718.292 kb on + strand, within PFR28_04130at 4718.292 kb on + strand, within PFR28_04130at 4718.293 kb on - strand, within PFR28_04130at 4718.293 kb on - strand, within PFR28_04130at 4718.293 kb on - strand, within PFR28_04130at 4718.293 kb on - strand, within PFR28_04130at 4718.293 kb on - strand, within PFR28_04130at 4718.331 kb on + strand, within PFR28_04130at 4718.332 kb on - strand, within PFR28_04130at 4718.332 kb on - strand, within PFR28_04130at 4718.442 kb on + strand, within PFR28_04130at 4718.442 kb on + strand, within PFR28_04130at 4718.442 kb on + strand, within PFR28_04130at 4718.443 kb on - strand, within PFR28_04130at 4718.492 kb on + strand, within PFR28_04130at 4718.493 kb on - strand, within PFR28_04130at 4718.493 kb on - strand, within PFR28_04130at 4718.541 kb on + strand, within PFR28_04130at 4718.541 kb on + strand, within PFR28_04130at 4718.541 kb on + strand, within PFR28_04130at 4718.541 kb on + strand, within PFR28_04130at 4718.541 kb on + strand, within PFR28_04130at 4718.542 kb on - strand, within PFR28_04130at 4718.542 kb on - strand, within PFR28_04130at 4718.542 kb on - strand, within PFR28_04130at 4718.542 kb on - strand, within PFR28_04130at 4718.542 kb on - strand, within PFR28_04130at 4718.544 kb on + strand, within PFR28_04130at 4718.545 kb on - strand, within PFR28_04130at 4718.619 kb on - strand, within PFR28_04130at 4718.640 kb on + strand, within PFR28_04130at 4718.641 kb on - strand, within PFR28_04130at 4718.700 kb on + strand, within PFR28_04130at 4718.700 kb on + strand, within PFR28_04130at 4718.701 kb on - strand, within PFR28_04130at 4718.862 kb on + strand, within PFR28_04130at 4718.863 kb on - strand, within PFR28_04130at 4718.863 kb on - strand, within PFR28_04130at 4718.863 kb on - strand, within PFR28_04130at 4718.945 kb on - strandat 4719.188 kb on + strand, within PFR28_04131at 4719.188 kb on + strand, within PFR28_04131at 4719.228 kb on + strand, within PFR28_04131at 4719.228 kb on + strand, within PFR28_04131at 4719.228 kb on + strand, within PFR28_04131at 4719.228 kb on + strand, within PFR28_04131at 4719.228 kb on + strand, within PFR28_04131at 4719.229 kb on - strand, within PFR28_04131at 4719.229 kb on - strand, within PFR28_04131at 4719.229 kb on - strand, within PFR28_04131at 4719.229 kb on - strand, within PFR28_04131at 4719.229 kb on - strand, within PFR28_04131at 4719.229 kb on - strand, within PFR28_04131at 4719.654 kb on + strandat 4719.655 kb on - strandat 4719.655 kb on - strandat 4719.673 kb on + strandat 4719.674 kb on - strandat 4719.674 kb on - strandat 4719.674 kb on - strandat 4719.674 kb on - strandat 4719.712 kb on - strandat 4719.712 kb on - strandat 4719.718 kb on - strandat 4719.767 kb on + strandat 4719.849 kb on - strandat 4719.849 kb on - strandat 4719.852 kb on + strandat 4719.852 kb on + strandat 4719.852 kb on + strandat 4719.852 kb on + strandat 4719.852 kb on + strandat 4719.853 kb on - strandat 4719.853 kb on - strandat 4719.993 kb on - strandat 4720.005 kb on + strandat 4720.005 kb on + strandat 4720.005 kb on + strandat 4720.006 kb on - strandat 4720.006 kb on - strandat 4720.013 kb on + strandat 4720.013 kb on + strandat 4720.013 kb on + strandat 4720.013 kb on + strandat 4720.013 kb on + strandat 4720.013 kb on + strandat 4720.014 kb on - strandat 4720.014 kb on - strandat 4720.014 kb on - strandat 4720.014 kb on - strandat 4720.014 kb on - strandat 4720.014 kb on - strandat 4720.269 kb on + strand, within PFR28_04132at 4720.270 kb on - strand, within PFR28_04132at 4720.270 kb on - strand, within PFR28_04132at 4720.331 kb on + strand, within PFR28_04132at 4720.332 kb on - strand, within PFR28_04132at 4720.332 kb on - strand, within PFR28_04132at 4720.377 kb on - strand, within PFR28_04132at 4720.401 kb on - strand, within PFR28_04132at 4720.401 kb on - strand, within PFR28_04132at 4720.589 kb on + strand, within PFR28_04132at 4720.589 kb on + strand, within PFR28_04132at 4720.590 kb on - strand, within PFR28_04132at 4720.590 kb on - strand, within PFR28_04132at 4720.590 kb on - strand, within PFR28_04132at 4720.622 kb on + strand, within PFR28_04132at 4720.622 kb on + strand, within PFR28_04132at 4720.622 kb on + strand, within PFR28_04132at 4720.623 kb on - strand, within PFR28_04132at 4720.623 kb on - strand, within PFR28_04132

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Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C)
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4,718,106 + -0.2
4,718,119 + -2.1
4,718,119 + +2.9
4,718,120 - +1.1
4,718,120 - +0.1
4,718,157 + -0.2
4,718,292 + PFR28_04130 0.22 -0.2
4,718,292 + PFR28_04130 0.22 +0.9
4,718,292 + PFR28_04130 0.22 -3.7
4,718,292 + PFR28_04130 0.22 -2.7
4,718,292 + PFR28_04130 0.22 +0.2
4,718,293 - PFR28_04130 0.22 -0.3
4,718,293 - PFR28_04130 0.22 +1.5
4,718,293 - PFR28_04130 0.22 -2.0
4,718,293 - PFR28_04130 0.22 +1.5
4,718,293 - PFR28_04130 0.22 +1.7
4,718,331 + PFR28_04130 0.26 -0.2
4,718,332 - PFR28_04130 0.26 +0.2
4,718,332 - PFR28_04130 0.26 +0.1
4,718,442 + PFR28_04130 0.39 -0.3
4,718,442 + PFR28_04130 0.39 +0.9
4,718,442 + PFR28_04130 0.39 -0.4
4,718,443 - PFR28_04130 0.39 -1.7
4,718,492 + PFR28_04130 0.45 +0.5
4,718,493 - PFR28_04130 0.45 -0.2
4,718,493 - PFR28_04130 0.45 +0.4
4,718,541 + PFR28_04130 0.51 -1.4
4,718,541 + PFR28_04130 0.51 -4.1
4,718,541 + PFR28_04130 0.51 +1.1
4,718,541 + PFR28_04130 0.51 +0.0
4,718,541 + PFR28_04130 0.51 +1.3
4,718,542 - PFR28_04130 0.51 -0.4
4,718,542 - PFR28_04130 0.51 -0.2
4,718,542 - PFR28_04130 0.51 +1.7
4,718,542 - PFR28_04130 0.51 -1.2
4,718,542 - PFR28_04130 0.51 +0.1
4,718,544 + PFR28_04130 0.51 +0.6
4,718,545 - PFR28_04130 0.51 -1.7
4,718,619 - PFR28_04130 0.60 +0.5
4,718,640 + PFR28_04130 0.62 -1.7
4,718,641 - PFR28_04130 0.62 -2.9
4,718,700 + PFR28_04130 0.69 -0.1
4,718,700 + PFR28_04130 0.69 -2.7
4,718,701 - PFR28_04130 0.69 -0.5
4,718,862 + PFR28_04130 0.88 -0.4
4,718,863 - PFR28_04130 0.88 +1.1
4,718,863 - PFR28_04130 0.88 -2.1
4,718,863 - PFR28_04130 0.88 -0.3
4,718,945 - -3.0
4,719,188 + PFR28_04131 0.23 -3.4
4,719,188 + PFR28_04131 0.23 -3.2
4,719,228 + PFR28_04131 0.30 -0.8
4,719,228 + PFR28_04131 0.30 -4.3
4,719,228 + PFR28_04131 0.30 -3.4
4,719,228 + PFR28_04131 0.30 -4.4
4,719,228 + PFR28_04131 0.30 -4.1
4,719,229 - PFR28_04131 0.30 +0.4
4,719,229 - PFR28_04131 0.30 -2.6
4,719,229 - PFR28_04131 0.30 -2.7
4,719,229 - PFR28_04131 0.30 -4.5
4,719,229 - PFR28_04131 0.30 -3.7
4,719,229 - PFR28_04131 0.30 -3.6
4,719,654 + -0.3
4,719,655 - -3.6
4,719,655 - -4.0
4,719,673 + -2.0
4,719,674 - -0.7
4,719,674 - -1.3
4,719,674 - -0.5
4,719,674 - -3.7
4,719,712 - -0.6
4,719,712 - -0.6
4,719,718 - +0.5
4,719,767 + -2.6
4,719,849 - -2.6
4,719,849 - +0.4
4,719,852 + -2.7
4,719,852 + -3.5
4,719,852 + -2.3
4,719,852 + -4.0
4,719,852 + -0.6
4,719,853 - +0.0
4,719,853 - +1.7
4,719,993 - +0.1
4,720,005 + -2.3
4,720,005 + -3.5
4,720,005 + -3.4
4,720,006 - -3.9
4,720,006 - -2.5
4,720,013 + -2.1
4,720,013 + -2.1
4,720,013 + -2.9
4,720,013 + -1.5
4,720,013 + -2.5
4,720,013 + -2.5
4,720,014 - -0.6
4,720,014 - -3.7
4,720,014 - -2.3
4,720,014 - -1.5
4,720,014 - -3.9
4,720,014 - -2.7
4,720,269 + PFR28_04132 0.14 -0.8
4,720,270 - PFR28_04132 0.14 -2.4
4,720,270 - PFR28_04132 0.14 -2.4
4,720,331 + PFR28_04132 0.16 -1.9
4,720,332 - PFR28_04132 0.16 -2.5
4,720,332 - PFR28_04132 0.16 -3.8
4,720,377 - PFR28_04132 0.18 -4.2
4,720,401 - PFR28_04132 0.18 -1.1
4,720,401 - PFR28_04132 0.18 -4.6
4,720,589 + PFR28_04132 0.25 -4.6
4,720,589 + PFR28_04132 0.25 -0.9
4,720,590 - PFR28_04132 0.25 -1.7
4,720,590 - PFR28_04132 0.25 -3.3
4,720,590 - PFR28_04132 0.25 -3.5
4,720,622 + PFR28_04132 0.26 -1.3
4,720,622 + PFR28_04132 0.26 -2.5
4,720,622 + PFR28_04132 0.26 -4.1
4,720,623 - PFR28_04132 0.26 -4.4
4,720,623 - PFR28_04132 0.26 -1.6

Or see this region's nucleotide sequence