Experiment: sn-glycero-3-phosphocholine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00862 and PFR28_00863 are separated by 280 nucleotides PFR28_00863 and PFR28_00864 overlap by 4 nucleotides PFR28_00864 and PFR28_00865 are separated by 233 nucleotides PFR28_00865 and PFR28_00866 overlap by 4 nucleotides
PFR28_00862: PFR28_00862 - hypothetical protein, at 934,819 to 935,214
_00862
PFR28_00863: PFR28_00863 - hypothetical protein, at 935,495 to 935,824
_00863
PFR28_00864: PFR28_00864 - hypothetical protein, at 935,821 to 937,395
_00864
PFR28_00865: PFR28_00865 - Cytochrome c biogenesis ATP-binding export protein CcmA, at 937,629 to 938,216
_00865
PFR28_00866: PFR28_00866 - Heme exporter protein B, at 938,213 to 938,881
_00866
Position (kb) 935
936
937
938 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 934.832 kb on + strand at 934.832 kb on + strand at 934.832 kb on + strand at 934.832 kb on + strand at 934.832 kb on + strand at 934.833 kb on - strand at 934.888 kb on + strand, within PFR28_00862 at 934.888 kb on + strand, within PFR28_00862 at 934.888 kb on + strand, within PFR28_00862 at 934.889 kb on - strand, within PFR28_00862 at 934.889 kb on - strand, within PFR28_00862 at 934.889 kb on - strand, within PFR28_00862 at 934.889 kb on - strand, within PFR28_00862 at 934.889 kb on - strand, within PFR28_00862 at 935.202 kb on + strand at 935.202 kb on + strand at 935.203 kb on - strand at 935.437 kb on + strand at 935.437 kb on + strand at 935.438 kb on - strand at 935.438 kb on - strand at 935.441 kb on + strand at 935.441 kb on + strand at 935.441 kb on + strand at 935.441 kb on + strand at 935.442 kb on - strand at 935.442 kb on - strand at 935.442 kb on - strand at 935.442 kb on - strand at 935.442 kb on - strand at 935.442 kb on - strand at 935.500 kb on - strand at 935.616 kb on + strand, within PFR28_00863 at 935.616 kb on + strand, within PFR28_00863 at 935.616 kb on + strand, within PFR28_00863 at 935.617 kb on - strand, within PFR28_00863 at 935.617 kb on - strand, within PFR28_00863 at 935.617 kb on - strand, within PFR28_00863 at 935.617 kb on - strand, within PFR28_00863 at 935.617 kb on - strand, within PFR28_00863 at 935.685 kb on + strand, within PFR28_00863 at 935.685 kb on + strand, within PFR28_00863 at 935.685 kb on + strand, within PFR28_00863 at 935.686 kb on - strand, within PFR28_00863 at 935.686 kb on - strand, within PFR28_00863 at 935.686 kb on - strand, within PFR28_00863 at 935.693 kb on + strand, within PFR28_00863 at 935.693 kb on + strand, within PFR28_00863 at 935.694 kb on - strand, within PFR28_00863 at 935.694 kb on - strand, within PFR28_00863 at 935.781 kb on + strand, within PFR28_00863 at 935.781 kb on + strand, within PFR28_00863 at 935.781 kb on + strand, within PFR28_00863 at 935.781 kb on + strand, within PFR28_00863 at 935.781 kb on + strand, within PFR28_00863 at 935.782 kb on - strand, within PFR28_00863 at 935.782 kb on - strand, within PFR28_00863 at 935.782 kb on - strand, within PFR28_00863 at 935.974 kb on - strand at 935.974 kb on - strand at 935.975 kb on + strand at 935.975 kb on + strand at 935.976 kb on - strand at 935.976 kb on - strand at 935.976 kb on - strand at 935.976 kb on - strand at 936.038 kb on - strand, within PFR28_00864 at 936.038 kb on - strand, within PFR28_00864 at 936.193 kb on - strand, within PFR28_00864 at 936.193 kb on - strand, within PFR28_00864 at 936.219 kb on + strand, within PFR28_00864 at 936.220 kb on - strand, within PFR28_00864 at 936.459 kb on + strand, within PFR28_00864 at 936.460 kb on - strand, within PFR28_00864 at 937.099 kb on - strand, within PFR28_00864 at 937.178 kb on - strand, within PFR28_00864 at 937.420 kb on + strand at 937.420 kb on + strand at 937.420 kb on + strand at 937.421 kb on - strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.434 kb on + strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.435 kb on - strand at 937.436 kb on + strand at 937.436 kb on + strand at 937.436 kb on + strand at 937.436 kb on + strand at 937.437 kb on - strand at 937.437 kb on - strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.518 kb on + strand at 937.519 kb on - strand at 937.519 kb on - strand at 937.519 kb on - strand at 937.519 kb on - strand at 937.519 kb on - strand at 937.519 kb on - strand at 937.519 kb on - strand at 937.519 kb on - strand at 937.519 kb on - strand at 937.519 kb on - strand at 937.519 kb on - strand at 937.519 kb on - strand at 937.519 kb on - strand at 937.519 kb on - strand at 937.533 kb on + strand at 937.563 kb on + strand at 937.563 kb on + strand at 937.563 kb on + strand at 937.563 kb on + strand at 937.563 kb on + strand at 937.565 kb on + strand at 937.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) remove 934,832 + +0.9 934,832 + +1.3 934,832 + +0.3 934,832 + +0.4 934,832 + +0.8 934,833 - +0.7 934,888 + PFR28_00862 0.17 -0.3 934,888 + PFR28_00862 0.17 +1.6 934,888 + PFR28_00862 0.17 -1.7 934,889 - PFR28_00862 0.18 -0.0 934,889 - PFR28_00862 0.18 +1.4 934,889 - PFR28_00862 0.18 -0.4 934,889 - PFR28_00862 0.18 -2.3 934,889 - PFR28_00862 0.18 +1.1 935,202 + +0.4 935,202 + +0.6 935,203 - -0.8 935,437 + -0.9 935,437 + -0.5 935,438 - -0.8 935,438 - +1.9 935,441 + -0.1 935,441 + +0.5 935,441 + -1.8 935,441 + -0.8 935,442 - +0.1 935,442 - -0.2 935,442 - -4.2 935,442 - +1.1 935,442 - -1.3 935,442 - -1.3 935,500 - +0.6 935,616 + PFR28_00863 0.37 -0.4 935,616 + PFR28_00863 0.37 -0.5 935,616 + PFR28_00863 0.37 +0.6 935,617 - PFR28_00863 0.37 -0.4 935,617 - PFR28_00863 0.37 +0.1 935,617 - PFR28_00863 0.37 -1.9 935,617 - PFR28_00863 0.37 -0.3 935,617 - PFR28_00863 0.37 +0.6 935,685 + PFR28_00863 0.58 +0.9 935,685 + PFR28_00863 0.58 -4.0 935,685 + PFR28_00863 0.58 -1.0 935,686 - PFR28_00863 0.58 -0.2 935,686 - PFR28_00863 0.58 +1.0 935,686 - PFR28_00863 0.58 -1.0 935,693 + PFR28_00863 0.60 +0.7 935,693 + PFR28_00863 0.60 -0.7 935,694 - PFR28_00863 0.60 -0.3 935,694 - PFR28_00863 0.60 -3.8 935,781 + PFR28_00863 0.87 -2.5 935,781 + PFR28_00863 0.87 -0.9 935,781 + PFR28_00863 0.87 -2.3 935,781 + PFR28_00863 0.87 -3.8 935,781 + PFR28_00863 0.87 -1.5 935,782 - PFR28_00863 0.87 -1.2 935,782 - PFR28_00863 0.87 +0.2 935,782 - PFR28_00863 0.87 -0.5 935,974 - +0.5 935,974 - -1.0 935,975 + +1.4 935,975 + +1.0 935,976 - -0.7 935,976 - -1.1 935,976 - +1.8 935,976 - -1.0 936,038 - PFR28_00864 0.14 +1.3 936,038 - PFR28_00864 0.14 -0.7 936,193 - PFR28_00864 0.24 -0.2 936,193 - PFR28_00864 0.24 -1.4 936,219 + PFR28_00864 0.25 -2.5 936,220 - PFR28_00864 0.25 -0.3 936,459 + PFR28_00864 0.41 +1.4 936,460 - PFR28_00864 0.41 +0.5 937,099 - PFR28_00864 0.81 +0.7 937,178 - PFR28_00864 0.86 +0.9 937,420 + -1.0 937,420 + -1.3 937,420 + -0.3 937,421 - +0.6 937,434 + -0.3 937,434 + -0.6 937,434 + -0.9 937,434 + -1.7 937,434 + -2.4 937,434 + -1.8 937,434 + +0.9 937,434 + +0.3 937,434 + -1.3 937,434 + +1.1 937,434 + +0.6 937,434 + -3.0 937,434 + -2.0 937,434 + +0.3 937,434 + -0.3 937,434 + +0.3 937,434 + -1.2 937,434 + +0.1 937,434 + +0.2 937,434 + -0.1 937,434 + +1.6 937,434 + -0.9 937,434 + +0.0 937,434 + -0.3 937,434 + -0.8 937,434 + -0.7 937,434 + -3.2 937,434 + -0.6 937,435 - -2.5 937,435 - +1.6 937,435 - +1.9 937,435 - +1.6 937,435 - +0.3 937,435 - +0.6 937,435 - -2.4 937,435 - +1.6 937,435 - -1.6 937,435 - -0.4 937,435 - +1.6 937,435 - -1.3 937,435 - +1.6 937,435 - -0.0 937,435 - +2.1 937,435 - -0.0 937,435 - +0.2 937,435 - -1.3 937,435 - -0.8 937,435 - +1.3 937,435 - -2.1 937,435 - +1.6 937,436 + +1.9 937,436 + -0.0 937,436 + -0.8 937,436 + -1.3 937,437 - +0.6 937,437 - -0.8 937,518 + -2.3 937,518 + +0.7 937,518 + -0.2 937,518 + +0.2 937,518 + -0.4 937,518 + -1.6 937,518 + +0.6 937,518 + +0.3 937,518 + +1.9 937,518 + -0.1 937,518 + -0.5 937,518 + +1.0 937,518 + -0.1 937,518 + -2.8 937,518 + +1.8 937,518 + +0.2 937,518 + +0.2 937,518 + +0.3 937,518 + +1.4 937,518 + +0.3 937,518 + +1.1 937,518 + +0.2 937,518 + -1.4 937,518 + +0.5 937,518 + +0.4 937,518 + -0.3 937,518 + -0.5 937,518 + -0.9 937,518 + -0.3 937,518 + +0.6 937,518 + +0.6 937,518 + -1.0 937,519 - -0.8 937,519 - -1.3 937,519 - +0.6 937,519 - -1.4 937,519 - -1.0 937,519 - -0.8 937,519 - +0.6 937,519 - +0.6 937,519 - -0.4 937,519 - -0.3 937,519 - +1.6 937,519 - -0.0 937,519 - -1.3 937,519 - +1.6 937,533 + +0.8 937,563 + +0.3 937,563 + -0.3 937,563 + -0.2 937,563 + +0.7 937,563 + -2.3 937,565 + +2.6 937,566 - -1.0
Or see this region's nucleotide sequence