Strain Fitness in Pseudomonas sp. RS175 around PFR28_00159

Experiment: sn-glycero-3-phosphocholine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00158 and PFR28_00159 are separated by 61 nucleotidesPFR28_00159 and PFR28_00160 are separated by 78 nucleotidesPFR28_00160 and PFR28_00161 are separated by 5 nucleotides PFR28_00158: PFR28_00158 - Ribonuclease G, at 182,096 to 183,553 _00158 PFR28_00159: PFR28_00159 - hypothetical protein, at 183,615 to 187,418 _00159 PFR28_00160: PFR28_00160 - Deaminated glutathione amidase, at 187,497 to 188,360 _00160 PFR28_00161: PFR28_00161 - Metalloprotease TldD, at 188,366 to 189,808 _00161 Position (kb) 183 184 185 186 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 182.646 kb on - strand, within PFR28_00158at 182.712 kb on - strand, within PFR28_00158at 182.712 kb on - strand, within PFR28_00158at 182.712 kb on - strand, within PFR28_00158at 182.861 kb on + strand, within PFR28_00158at 182.955 kb on - strand, within PFR28_00158at 183.347 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.404 kb on - strand, within PFR28_00158at 183.404 kb on - strand, within PFR28_00158at 183.404 kb on - strand, within PFR28_00158at 183.404 kb on - strand, within PFR28_00158at 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.519 kb on - strandat 183.519 kb on - strandat 183.519 kb on - strandat 183.519 kb on - strandat 183.519 kb on - strandat 183.519 kb on - strandat 183.533 kb on + strandat 183.533 kb on + strandat 183.533 kb on + strandat 183.534 kb on - strandat 183.534 kb on - strandat 183.534 kb on - strandat 183.685 kb on + strandat 183.685 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.294 kb on - strand, within PFR28_00159at 184.294 kb on - strand, within PFR28_00159at 184.461 kb on + strand, within PFR28_00159at 184.462 kb on - strand, within PFR28_00159at 184.509 kb on + strand, within PFR28_00159at 184.509 kb on + strand, within PFR28_00159at 184.776 kb on + strand, within PFR28_00159at 184.848 kb on + strand, within PFR28_00159at 184.849 kb on - strand, within PFR28_00159at 184.977 kb on + strand, within PFR28_00159at 185.053 kb on + strand, within PFR28_00159at 185.054 kb on - strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.124 kb on + strand, within PFR28_00159at 185.125 kb on - strand, within PFR28_00159at 185.125 kb on - strand, within PFR28_00159at 185.125 kb on - strand, within PFR28_00159at 185.125 kb on - strand, within PFR28_00159at 185.125 kb on - strand, within PFR28_00159at 185.178 kb on + strand, within PFR28_00159at 185.178 kb on + strand, within PFR28_00159at 185.179 kb on - strand, within PFR28_00159at 185.179 kb on - strand, within PFR28_00159at 185.179 kb on - strand, within PFR28_00159at 185.179 kb on - strand, within PFR28_00159at 185.179 kb on - strand, within PFR28_00159at 185.179 kb on - strand, within PFR28_00159at 185.266 kb on - strand, within PFR28_00159at 185.266 kb on - strand, within PFR28_00159at 185.279 kb on + strand, within PFR28_00159at 185.280 kb on - strand, within PFR28_00159at 185.421 kb on + strand, within PFR28_00159at 185.421 kb on + strand, within PFR28_00159at 185.421 kb on + strand, within PFR28_00159at 185.421 kb on + strand, within PFR28_00159at 185.421 kb on + strand, within PFR28_00159at 185.421 kb on + strand, within PFR28_00159at 185.422 kb on - strand, within PFR28_00159at 185.422 kb on - strand, within PFR28_00159at 185.422 kb on - strand, within PFR28_00159at 185.422 kb on - strand, within PFR28_00159at 185.422 kb on - strand, within PFR28_00159at 185.422 kb on - strand, within PFR28_00159at 185.422 kb on - strand, within PFR28_00159at 185.422 kb on - strand, within PFR28_00159at 186.129 kb on + strand, within PFR28_00159at 186.153 kb on + strand, within PFR28_00159at 186.153 kb on + strand, within PFR28_00159at 186.154 kb on - strand, within PFR28_00159at 186.241 kb on + strand, within PFR28_00159at 186.303 kb on + strand, within PFR28_00159at 186.303 kb on + strand, within PFR28_00159at 186.303 kb on + strand, within PFR28_00159at 186.304 kb on - strand, within PFR28_00159at 186.304 kb on - strand, within PFR28_00159at 186.304 kb on - strand, within PFR28_00159at 186.304 kb on - strand, within PFR28_00159at 186.522 kb on + strand, within PFR28_00159at 186.523 kb on - strand, within PFR28_00159at 186.523 kb on - strand, within PFR28_00159at 186.523 kb on - strand, within PFR28_00159at 186.523 kb on - strand, within PFR28_00159at 186.679 kb on + strand, within PFR28_00159at 186.679 kb on + strand, within PFR28_00159at 186.792 kb on + strand, within PFR28_00159at 186.792 kb on + strand, within PFR28_00159at 186.792 kb on + strand, within PFR28_00159at 186.792 kb on + strand, within PFR28_00159at 186.792 kb on + strand, within PFR28_00159at 186.793 kb on - strand, within PFR28_00159at 186.793 kb on - strand, within PFR28_00159at 186.793 kb on - strand, within PFR28_00159at 186.793 kb on - strand, within PFR28_00159at 187.089 kb on + strandat 187.089 kb on + strandat 187.090 kb on - strandat 187.131 kb on + strandat 187.132 kb on - strandat 187.132 kb on - strandat 187.132 kb on - strandat 187.132 kb on - strandat 187.132 kb on - strandat 187.253 kb on + strandat 187.254 kb on - strandat 187.320 kb on - strandat 187.357 kb on + strandat 187.357 kb on + strandat 187.357 kb on + strandat 187.362 kb on + strandat 187.362 kb on + strandat 187.363 kb on - strandat 187.363 kb on - strandat 187.833 kb on + strand, within PFR28_00160at 187.902 kb on + strand, within PFR28_00160at 187.902 kb on + strand, within PFR28_00160at 187.902 kb on + strand, within PFR28_00160at 187.902 kb on + strand, within PFR28_00160at 187.902 kb on + strand, within PFR28_00160at 187.902 kb on + strand, within PFR28_00160at 187.902 kb on + strand, within PFR28_00160at 187.902 kb on + strand, within PFR28_00160at 187.902 kb on + strand, within PFR28_00160at 187.903 kb on - strand, within PFR28_00160at 187.903 kb on - strand, within PFR28_00160at 187.903 kb on - strand, within PFR28_00160at 187.903 kb on - strand, within PFR28_00160at 187.903 kb on - strand, within PFR28_00160at 187.903 kb on - strand, within PFR28_00160at 187.903 kb on - strand, within PFR28_00160at 187.908 kb on + strand, within PFR28_00160at 187.908 kb on + strand, within PFR28_00160at 187.908 kb on + strand, within PFR28_00160at 187.909 kb on - strand, within PFR28_00160at 187.968 kb on + strand, within PFR28_00160at 187.968 kb on + strand, within PFR28_00160at 187.969 kb on - strand, within PFR28_00160at 187.969 kb on - strand, within PFR28_00160at 187.969 kb on - strand, within PFR28_00160at 187.969 kb on - strand, within PFR28_00160at 187.992 kb on + strand, within PFR28_00160at 187.992 kb on + strand, within PFR28_00160at 187.993 kb on - strand, within PFR28_00160at 187.993 kb on - strand, within PFR28_00160at 187.994 kb on + strand, within PFR28_00160at 187.994 kb on + strand, within PFR28_00160at 188.112 kb on + strand, within PFR28_00160at 188.112 kb on + strand, within PFR28_00160at 188.112 kb on + strand, within PFR28_00160at 188.112 kb on + strand, within PFR28_00160at 188.112 kb on + strand, within PFR28_00160at 188.112 kb on + strand, within PFR28_00160at 188.112 kb on + strand, within PFR28_00160at 188.112 kb on + strand, within PFR28_00160at 188.112 kb on + strand, within PFR28_00160at 188.112 kb on + strand, within PFR28_00160at 188.113 kb on - strand, within PFR28_00160at 188.113 kb on - strand, within PFR28_00160at 188.113 kb on - strand, within PFR28_00160at 188.113 kb on - strand, within PFR28_00160at 188.113 kb on - strand, within PFR28_00160at 188.113 kb on - strand, within PFR28_00160at 188.358 kb on + strandat 188.358 kb on + strandat 188.358 kb on + strandat 188.358 kb on + strandat 188.358 kb on + strandat 188.358 kb on + strandat 188.359 kb on - strandat 188.359 kb on - strandat 188.359 kb on - strandat 188.359 kb on - strandat 188.359 kb on - strandat 188.359 kb on - strandat 188.359 kb on - strandat 188.365 kb on + strandat 188.365 kb on + strandat 188.365 kb on + strandat 188.365 kb on + strandat 188.365 kb on + strandat 188.365 kb on + strandat 188.365 kb on + strandat 188.365 kb on + strandat 188.365 kb on + strandat 188.365 kb on + strandat 188.365 kb on + strandat 188.366 kb on - strandat 188.366 kb on - strandat 188.366 kb on - strandat 188.366 kb on - strandat 188.366 kb on - strandat 188.403 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C)
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182,646 - PFR28_00158 0.38 -2.4
182,712 - PFR28_00158 0.42 -2.2
182,712 - PFR28_00158 0.42 -0.0
182,712 - PFR28_00158 0.42 -2.1
182,861 + PFR28_00158 0.52 -0.6
182,955 - PFR28_00158 0.59 +1.6
183,347 + PFR28_00158 0.86 +1.4
183,403 + PFR28_00158 0.90 +0.3
183,403 + PFR28_00158 0.90 -2.9
183,403 + PFR28_00158 0.90 -1.9
183,403 + PFR28_00158 0.90 -1.4
183,403 + PFR28_00158 0.90 -0.3
183,403 + PFR28_00158 0.90 +0.3
183,403 + PFR28_00158 0.90 +1.6
183,403 + PFR28_00158 0.90 +0.4
183,403 + PFR28_00158 0.90 -0.8
183,404 - PFR28_00158 0.90 -0.6
183,404 - PFR28_00158 0.90 +0.4
183,404 - PFR28_00158 0.90 -3.5
183,404 - PFR28_00158 0.90 -1.5
183,518 + -0.2
183,518 + +0.6
183,518 + +1.3
183,518 + -0.3
183,518 + +0.1
183,518 + +0.8
183,518 + -0.3
183,518 + +1.1
183,518 + -0.5
183,518 + -0.1
183,519 - -3.1
183,519 - -1.5
183,519 - -2.5
183,519 - -1.4
183,519 - -1.2
183,519 - -0.7
183,533 + +0.2
183,533 + -1.4
183,533 + -0.6
183,534 - +0.6
183,534 - -1.4
183,534 - +0.2
183,685 + +0.3
183,685 + -0.4
183,699 + -1.5
183,699 + -1.7
183,699 + -0.9
183,699 + -0.9
183,699 + -1.4
183,699 + -0.7
183,699 + -2.2
183,699 + -1.2
183,699 + -0.4
183,699 + -1.2
183,699 + +1.1
183,699 + -0.2
183,699 + -1.5
183,699 + +0.3
183,699 + -1.8
183,700 - -2.2
183,700 - -0.9
183,700 - +0.6
183,700 - +0.1
183,700 - -1.2
183,700 - -0.9
183,700 - +0.4
183,700 - -0.4
183,700 - -0.9
183,700 - -1.7
183,700 - -1.2
183,700 - -0.7
183,700 - -1.4
183,700 - -1.5
183,700 - +0.1
183,700 - -1.2
184,152 + PFR28_00159 0.14 +0.6
184,152 + PFR28_00159 0.14 +0.6
184,152 + PFR28_00159 0.14 -1.5
184,152 + PFR28_00159 0.14 -0.7
184,152 + PFR28_00159 0.14 +0.1
184,152 + PFR28_00159 0.14 -0.4
184,152 + PFR28_00159 0.14 -2.1
184,152 + PFR28_00159 0.14 -2.5
184,153 - PFR28_00159 0.14 -2.7
184,153 - PFR28_00159 0.14 -0.4
184,153 - PFR28_00159 0.14 -1.2
184,153 - PFR28_00159 0.14 +0.6
184,153 - PFR28_00159 0.14 -2.2
184,153 - PFR28_00159 0.14 -0.9
184,153 - PFR28_00159 0.14 +0.6
184,294 - PFR28_00159 0.18 -1.2
184,294 - PFR28_00159 0.18 -0.9
184,461 + PFR28_00159 0.22 -1.2
184,462 - PFR28_00159 0.22 +1.0
184,509 + PFR28_00159 0.24 -2.1
184,509 + PFR28_00159 0.24 -0.7
184,776 + PFR28_00159 0.31 -0.7
184,848 + PFR28_00159 0.32 -1.8
184,849 - PFR28_00159 0.32 +1.6
184,977 + PFR28_00159 0.36 -1.2
185,053 + PFR28_00159 0.38 +0.1
185,054 - PFR28_00159 0.38 -0.9
185,124 + PFR28_00159 0.40 +0.6
185,124 + PFR28_00159 0.40 -1.4
185,124 + PFR28_00159 0.40 -1.5
185,124 + PFR28_00159 0.40 -0.9
185,124 + PFR28_00159 0.40 -1.5
185,124 + PFR28_00159 0.40 -2.1
185,124 + PFR28_00159 0.40 +0.9
185,124 + PFR28_00159 0.40 -1.5
185,124 + PFR28_00159 0.40 -1.7
185,124 + PFR28_00159 0.40 -1.2
185,124 + PFR28_00159 0.40 -1.8
185,124 + PFR28_00159 0.40 +0.6
185,124 + PFR28_00159 0.40 -1.9
185,124 + PFR28_00159 0.40 -1.8
185,125 - PFR28_00159 0.40 -1.2
185,125 - PFR28_00159 0.40 -1.7
185,125 - PFR28_00159 0.40 -1.4
185,125 - PFR28_00159 0.40 -1.5
185,125 - PFR28_00159 0.40 -0.4
185,178 + PFR28_00159 0.41 -0.4
185,178 + PFR28_00159 0.41 -1.5
185,179 - PFR28_00159 0.41 -0.4
185,179 - PFR28_00159 0.41 -0.7
185,179 - PFR28_00159 0.41 +0.6
185,179 - PFR28_00159 0.41 +0.6
185,179 - PFR28_00159 0.41 +1.6
185,179 - PFR28_00159 0.41 -1.2
185,266 - PFR28_00159 0.43 -2.4
185,266 - PFR28_00159 0.43 -0.7
185,279 + PFR28_00159 0.44 -1.7
185,280 - PFR28_00159 0.44 -1.7
185,421 + PFR28_00159 0.47 +0.6
185,421 + PFR28_00159 0.47 +0.4
185,421 + PFR28_00159 0.47 +1.0
185,421 + PFR28_00159 0.47 -1.2
185,421 + PFR28_00159 0.47 +1.6
185,421 + PFR28_00159 0.47 -1.9
185,422 - PFR28_00159 0.48 +1.6
185,422 - PFR28_00159 0.48 -1.0
185,422 - PFR28_00159 0.48 -1.4
185,422 - PFR28_00159 0.48 -1.4
185,422 - PFR28_00159 0.48 -1.9
185,422 - PFR28_00159 0.48 +0.9
185,422 - PFR28_00159 0.48 -2.1
185,422 - PFR28_00159 0.48 -1.5
186,129 + PFR28_00159 0.66 -0.9
186,153 + PFR28_00159 0.67 -1.5
186,153 + PFR28_00159 0.67 -0.7
186,154 - PFR28_00159 0.67 +1.1
186,241 + PFR28_00159 0.69 +1.1
186,303 + PFR28_00159 0.71 -1.8
186,303 + PFR28_00159 0.71 -0.4
186,303 + PFR28_00159 0.71 +0.4
186,304 - PFR28_00159 0.71 -0.4
186,304 - PFR28_00159 0.71 -0.7
186,304 - PFR28_00159 0.71 -0.7
186,304 - PFR28_00159 0.71 -0.4
186,522 + PFR28_00159 0.76 -0.4
186,523 - PFR28_00159 0.76 -1.2
186,523 - PFR28_00159 0.76 -0.7
186,523 - PFR28_00159 0.76 -0.7
186,523 - PFR28_00159 0.76 +2.2
186,679 + PFR28_00159 0.81 +1.6
186,679 + PFR28_00159 0.81 -1.2
186,792 + PFR28_00159 0.84 +1.6
186,792 + PFR28_00159 0.84 -0.7
186,792 + PFR28_00159 0.84 -1.4
186,792 + PFR28_00159 0.84 -2.3
186,792 + PFR28_00159 0.84 +1.6
186,793 - PFR28_00159 0.84 -0.4
186,793 - PFR28_00159 0.84 +0.1
186,793 - PFR28_00159 0.84 -1.9
186,793 - PFR28_00159 0.84 -2.2
187,089 + -1.5
187,089 + +0.1
187,090 - -0.7
187,131 + +0.6
187,132 - -1.7
187,132 - +0.1
187,132 - -0.9
187,132 - +0.1
187,132 - -0.9
187,253 + +1.6
187,254 - -0.4
187,320 - -1.4
187,357 + -1.2
187,357 + +1.6
187,357 + -1.7
187,362 + -0.7
187,362 + +1.6
187,363 - +0.1
187,363 - +1.6
187,833 + PFR28_00160 0.39 +2.3
187,902 + PFR28_00160 0.47 +1.6
187,902 + PFR28_00160 0.47 -2.3
187,902 + PFR28_00160 0.47 +2.6
187,902 + PFR28_00160 0.47 +1.1
187,902 + PFR28_00160 0.47 -1.5
187,902 + PFR28_00160 0.47 +1.1
187,902 + PFR28_00160 0.47 -3.1
187,902 + PFR28_00160 0.47 +1.5
187,902 + PFR28_00160 0.47 +0.9
187,903 - PFR28_00160 0.47 +1.1
187,903 - PFR28_00160 0.47 -0.3
187,903 - PFR28_00160 0.47 +0.4
187,903 - PFR28_00160 0.47 -0.1
187,903 - PFR28_00160 0.47 +1.5
187,903 - PFR28_00160 0.47 -1.8
187,903 - PFR28_00160 0.47 -0.1
187,908 + PFR28_00160 0.48 +0.9
187,908 + PFR28_00160 0.48 -2.5
187,908 + PFR28_00160 0.48 -2.4
187,909 - PFR28_00160 0.48 -1.5
187,968 + PFR28_00160 0.55 +2.1
187,968 + PFR28_00160 0.55 +0.9
187,969 - PFR28_00160 0.55 +0.6
187,969 - PFR28_00160 0.55 -0.7
187,969 - PFR28_00160 0.55 -1.7
187,969 - PFR28_00160 0.55 -2.2
187,992 + PFR28_00160 0.57 +0.4
187,992 + PFR28_00160 0.57 -0.3
187,993 - PFR28_00160 0.57 -1.0
187,993 - PFR28_00160 0.57 +0.0
187,994 + PFR28_00160 0.58 -0.6
187,994 + PFR28_00160 0.58 -0.9
188,112 + PFR28_00160 0.71 +0.9
188,112 + PFR28_00160 0.71 -0.5
188,112 + PFR28_00160 0.71 +0.6
188,112 + PFR28_00160 0.71 -0.1
188,112 + PFR28_00160 0.71 +1.1
188,112 + PFR28_00160 0.71 -1.4
188,112 + PFR28_00160 0.71 +1.2
188,112 + PFR28_00160 0.71 +1.5
188,112 + PFR28_00160 0.71 +1.1
188,112 + PFR28_00160 0.71 +0.8
188,113 - PFR28_00160 0.71 +0.4
188,113 - PFR28_00160 0.71 -0.9
188,113 - PFR28_00160 0.71 +1.6
188,113 - PFR28_00160 0.71 -0.7
188,113 - PFR28_00160 0.71 -0.9
188,113 - PFR28_00160 0.71 -1.2
188,358 + -0.4
188,358 + +1.2
188,358 + -1.1
188,358 + +1.2
188,358 + -0.2
188,358 + -1.8
188,359 - -0.8
188,359 - -0.6
188,359 - -2.0
188,359 - -0.2
188,359 - -0.6
188,359 - -2.1
188,359 - -1.8
188,365 + -1.7
188,365 + -0.9
188,365 + +0.7
188,365 + +0.3
188,365 + -0.2
188,365 + -0.2
188,365 + +0.3
188,365 + -0.7
188,365 + -0.9
188,365 + +1.3
188,365 + +1.1
188,366 - -0.8
188,366 - -2.9
188,366 - -0.4
188,366 - -0.4
188,366 - +1.0
188,403 + +0.6

Or see this region's nucleotide sequence