Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS24160 and ABIE41_RS24165 are separated by 358 nucleotides ABIE41_RS24165 and ABIE41_RS24170 are separated by 206 nucleotides ABIE41_RS24170 and ABIE41_RS24175 overlap by 4 nucleotides
ABIE41_RS24160: ABIE41_RS24160 - methyl-accepting chemotaxis protein, at 4,988,081 to 4,990,174
_RS24160
ABIE41_RS24165: ABIE41_RS24165 - methyl-accepting chemotaxis protein, at 4,990,533 to 4,993,217
_RS24165
ABIE41_RS24170: ABIE41_RS24170 - 5-oxoprolinase subunit PxpA, at 4,993,424 to 4,994,182
_RS24170
ABIE41_RS24175: ABIE41_RS24175 - allophanate hydrolase subunit 1, at 4,994,179 to 4,994,916
_RS24175
Position (kb) 4990
4991
4992
4993
4994 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.673 kb on + strand, within ABIE41_RS24160 at 4989.805 kb on - strand, within ABIE41_RS24160 at 4989.805 kb on - strand, within ABIE41_RS24160 at 4989.825 kb on + strand, within ABIE41_RS24160 at 4989.826 kb on - strand, within ABIE41_RS24160 at 4989.826 kb on - strand, within ABIE41_RS24160 at 4989.928 kb on - strand, within ABIE41_RS24160 at 4989.955 kb on + strand, within ABIE41_RS24160 at 4989.955 kb on + strand, within ABIE41_RS24160 at 4989.956 kb on - strand, within ABIE41_RS24160 at 4989.956 kb on - strand, within ABIE41_RS24160 at 4990.069 kb on + strand at 4990.069 kb on + strand at 4990.069 kb on + strand at 4990.070 kb on - strand at 4990.070 kb on - strand at 4990.070 kb on - strand at 4990.070 kb on - strand at 4990.070 kb on - strand at 4990.084 kb on - strand at 4991.094 kb on + strand, within ABIE41_RS24165 at 4991.094 kb on + strand, within ABIE41_RS24165 at 4991.095 kb on - strand, within ABIE41_RS24165 at 4991.554 kb on + strand, within ABIE41_RS24165 at 4991.554 kb on + strand, within ABIE41_RS24165 at 4991.826 kb on - strand, within ABIE41_RS24165 at 4991.834 kb on + strand, within ABIE41_RS24165 at 4991.835 kb on - strand, within ABIE41_RS24165 at 4991.835 kb on - strand, within ABIE41_RS24165 at 4991.836 kb on + strand, within ABIE41_RS24165 at 4991.837 kb on - strand, within ABIE41_RS24165 at 4991.837 kb on - strand, within ABIE41_RS24165 at 4991.837 kb on - strand, within ABIE41_RS24165 at 4991.837 kb on - strand, within ABIE41_RS24165 at 4991.837 kb on - strand, within ABIE41_RS24165 at 4991.876 kb on - strand, within ABIE41_RS24165 at 4992.214 kb on + strand, within ABIE41_RS24165 at 4992.214 kb on + strand, within ABIE41_RS24165 at 4992.214 kb on + strand, within ABIE41_RS24165 at 4992.214 kb on + strand, within ABIE41_RS24165 at 4992.215 kb on - strand, within ABIE41_RS24165 at 4992.215 kb on - strand, within ABIE41_RS24165 at 4992.215 kb on - strand, within ABIE41_RS24165 at 4992.215 kb on - strand, within ABIE41_RS24165 at 4992.215 kb on - strand, within ABIE41_RS24165 at 4992.215 kb on - strand, within ABIE41_RS24165 at 4992.215 kb on - strand, within ABIE41_RS24165 at 4992.218 kb on + strand, within ABIE41_RS24165 at 4992.218 kb on + strand, within ABIE41_RS24165 at 4992.218 kb on + strand, within ABIE41_RS24165 at 4992.218 kb on + strand, within ABIE41_RS24165 at 4992.218 kb on + strand, within ABIE41_RS24165 at 4992.218 kb on + strand, within ABIE41_RS24165 at 4992.219 kb on - strand, within ABIE41_RS24165 at 4992.219 kb on - strand, within ABIE41_RS24165 at 4992.652 kb on + strand, within ABIE41_RS24165 at 4992.652 kb on + strand, within ABIE41_RS24165 at 4992.652 kb on + strand, within ABIE41_RS24165 at 4992.653 kb on - strand, within ABIE41_RS24165 at 4992.793 kb on + strand, within ABIE41_RS24165 at 4992.793 kb on + strand, within ABIE41_RS24165 at 4992.793 kb on + strand, within ABIE41_RS24165 at 4992.793 kb on + strand, within ABIE41_RS24165 at 4992.793 kb on + strand, within ABIE41_RS24165 at 4992.793 kb on + strand, within ABIE41_RS24165 at 4992.794 kb on - strand, within ABIE41_RS24165 at 4992.794 kb on - strand, within ABIE41_RS24165 at 4992.794 kb on - strand, within ABIE41_RS24165 at 4992.794 kb on - strand, within ABIE41_RS24165 at 4992.794 kb on - strand, within ABIE41_RS24165 at 4992.794 kb on - strand, within ABIE41_RS24165 at 4992.794 kb on - strand, within ABIE41_RS24165 at 4992.794 kb on - strand, within ABIE41_RS24165 at 4992.794 kb on - strand, within ABIE41_RS24165 at 4992.797 kb on - strand, within ABIE41_RS24165 at 4993.179 kb on + strand at 4993.179 kb on + strand at 4993.179 kb on + strand at 4993.179 kb on + strand at 4993.180 kb on - strand at 4993.180 kb on - strand at 4993.180 kb on - strand at 4993.180 kb on - strand at 4993.180 kb on - strand at 4993.180 kb on - strand at 4993.181 kb on - strand at 4993.369 kb on + strand at 4993.369 kb on + strand at 4993.369 kb on + strand at 4993.370 kb on - strand at 4993.375 kb on + strand at 4993.375 kb on + strand at 4993.376 kb on - strand at 4993.376 kb on - strand at 4993.472 kb on + strand at 4993.472 kb on + strand at 4993.473 kb on - strand at 4993.724 kb on + strand, within ABIE41_RS24170 at 4993.724 kb on + strand, within ABIE41_RS24170 at 4993.745 kb on + strand, within ABIE41_RS24170 at 4993.745 kb on + strand, within ABIE41_RS24170 at 4993.745 kb on + strand, within ABIE41_RS24170 at 4993.745 kb on + strand, within ABIE41_RS24170 at 4993.746 kb on - strand, within ABIE41_RS24170 at 4993.746 kb on - strand, within ABIE41_RS24170 at 4993.746 kb on - strand, within ABIE41_RS24170 at 4993.746 kb on - strand, within ABIE41_RS24170 at 4993.746 kb on - strand, within ABIE41_RS24170 at 4993.934 kb on + strand, within ABIE41_RS24170 at 4993.935 kb on - strand, within ABIE41_RS24170 at 4994.191 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM remove 4,989,612 + ABIE41_RS24160 0.73 -0.1 4,989,612 + ABIE41_RS24160 0.73 -0.5 4,989,612 + ABIE41_RS24160 0.73 +0.5 4,989,612 + ABIE41_RS24160 0.73 +0.2 4,989,612 + ABIE41_RS24160 0.73 -0.4 4,989,612 + ABIE41_RS24160 0.73 +1.1 4,989,612 + ABIE41_RS24160 0.73 -1.2 4,989,613 - ABIE41_RS24160 0.73 -0.4 4,989,613 - ABIE41_RS24160 0.73 -0.1 4,989,613 - ABIE41_RS24160 0.73 -0.0 4,989,613 - ABIE41_RS24160 0.73 -0.0 4,989,613 - ABIE41_RS24160 0.73 +1.8 4,989,613 - ABIE41_RS24160 0.73 -1.3 4,989,613 - ABIE41_RS24160 0.73 -0.2 4,989,613 - ABIE41_RS24160 0.73 -0.9 4,989,613 - ABIE41_RS24160 0.73 -0.2 4,989,673 + ABIE41_RS24160 0.76 +0.2 4,989,805 - ABIE41_RS24160 0.82 -0.3 4,989,805 - ABIE41_RS24160 0.82 -0.6 4,989,825 + ABIE41_RS24160 0.83 -3.4 4,989,826 - ABIE41_RS24160 0.83 +0.3 4,989,826 - ABIE41_RS24160 0.83 -0.1 4,989,928 - ABIE41_RS24160 0.88 +1.1 4,989,955 + ABIE41_RS24160 0.89 +0.6 4,989,955 + ABIE41_RS24160 0.89 +0.1 4,989,956 - ABIE41_RS24160 0.90 -0.9 4,989,956 - ABIE41_RS24160 0.90 +1.0 4,990,069 + -0.4 4,990,069 + +0.9 4,990,069 + +0.3 4,990,070 - -0.0 4,990,070 - +0.6 4,990,070 - -0.1 4,990,070 - +1.4 4,990,070 - -0.6 4,990,084 - +0.1 4,991,094 + ABIE41_RS24165 0.21 +0.6 4,991,094 + ABIE41_RS24165 0.21 +0.8 4,991,095 - ABIE41_RS24165 0.21 -0.8 4,991,554 + ABIE41_RS24165 0.38 +0.0 4,991,554 + ABIE41_RS24165 0.38 -0.3 4,991,826 - ABIE41_RS24165 0.48 -1.0 4,991,834 + ABIE41_RS24165 0.48 -0.6 4,991,835 - ABIE41_RS24165 0.48 -0.4 4,991,835 - ABIE41_RS24165 0.48 -0.0 4,991,836 + ABIE41_RS24165 0.49 -0.1 4,991,837 - ABIE41_RS24165 0.49 -0.5 4,991,837 - ABIE41_RS24165 0.49 -3.3 4,991,837 - ABIE41_RS24165 0.49 -0.1 4,991,837 - ABIE41_RS24165 0.49 -1.9 4,991,837 - ABIE41_RS24165 0.49 -0.3 4,991,876 - ABIE41_RS24165 0.50 +0.8 4,992,214 + ABIE41_RS24165 0.63 -0.0 4,992,214 + ABIE41_RS24165 0.63 -0.8 4,992,214 + ABIE41_RS24165 0.63 -0.6 4,992,214 + ABIE41_RS24165 0.63 +0.5 4,992,215 - ABIE41_RS24165 0.63 -0.0 4,992,215 - ABIE41_RS24165 0.63 +0.8 4,992,215 - ABIE41_RS24165 0.63 -0.1 4,992,215 - ABIE41_RS24165 0.63 -0.4 4,992,215 - ABIE41_RS24165 0.63 -0.2 4,992,215 - ABIE41_RS24165 0.63 +0.3 4,992,215 - ABIE41_RS24165 0.63 -0.4 4,992,218 + ABIE41_RS24165 0.63 -0.0 4,992,218 + ABIE41_RS24165 0.63 -1.0 4,992,218 + ABIE41_RS24165 0.63 +1.1 4,992,218 + ABIE41_RS24165 0.63 -0.7 4,992,218 + ABIE41_RS24165 0.63 -0.1 4,992,218 + ABIE41_RS24165 0.63 +0.5 4,992,219 - ABIE41_RS24165 0.63 +0.2 4,992,219 - ABIE41_RS24165 0.63 +0.2 4,992,652 + ABIE41_RS24165 0.79 -0.7 4,992,652 + ABIE41_RS24165 0.79 +0.1 4,992,652 + ABIE41_RS24165 0.79 +0.4 4,992,653 - ABIE41_RS24165 0.79 +0.2 4,992,793 + ABIE41_RS24165 0.84 +0.3 4,992,793 + ABIE41_RS24165 0.84 -0.8 4,992,793 + ABIE41_RS24165 0.84 +0.9 4,992,793 + ABIE41_RS24165 0.84 +2.0 4,992,793 + ABIE41_RS24165 0.84 -0.2 4,992,793 + ABIE41_RS24165 0.84 -1.5 4,992,794 - ABIE41_RS24165 0.84 +0.7 4,992,794 - ABIE41_RS24165 0.84 -2.1 4,992,794 - ABIE41_RS24165 0.84 -0.9 4,992,794 - ABIE41_RS24165 0.84 +0.4 4,992,794 - ABIE41_RS24165 0.84 +1.6 4,992,794 - ABIE41_RS24165 0.84 -0.5 4,992,794 - ABIE41_RS24165 0.84 -0.7 4,992,794 - ABIE41_RS24165 0.84 +0.2 4,992,794 - ABIE41_RS24165 0.84 +0.3 4,992,797 - ABIE41_RS24165 0.84 -0.1 4,993,179 + +0.6 4,993,179 + -0.5 4,993,179 + -0.9 4,993,179 + +0.6 4,993,180 - -0.0 4,993,180 - -0.1 4,993,180 - -0.5 4,993,180 - -0.2 4,993,180 - -0.1 4,993,180 - -0.6 4,993,181 - +1.4 4,993,369 + +0.2 4,993,369 + -0.9 4,993,369 + +0.7 4,993,370 - +0.6 4,993,375 + -0.1 4,993,375 + -2.0 4,993,376 - -0.4 4,993,376 - +0.8 4,993,472 + +0.3 4,993,472 + +0.7 4,993,473 - -1.0 4,993,724 + ABIE41_RS24170 0.40 +0.1 4,993,724 + ABIE41_RS24170 0.40 -0.4 4,993,745 + ABIE41_RS24170 0.42 +0.0 4,993,745 + ABIE41_RS24170 0.42 -0.8 4,993,745 + ABIE41_RS24170 0.42 -2.0 4,993,745 + ABIE41_RS24170 0.42 +0.8 4,993,746 - ABIE41_RS24170 0.42 +0.6 4,993,746 - ABIE41_RS24170 0.42 +3.4 4,993,746 - ABIE41_RS24170 0.42 -1.1 4,993,746 - ABIE41_RS24170 0.42 -2.7 4,993,746 - ABIE41_RS24170 0.42 -0.2 4,993,934 + ABIE41_RS24170 0.67 +0.5 4,993,935 - ABIE41_RS24170 0.67 -0.5 4,994,191 - +0.1
Or see this region's nucleotide sequence