Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS24090 and ABIE41_RS24095 are separated by 122 nucleotides ABIE41_RS24095 and ABIE41_RS24100 are separated by 4 nucleotides ABIE41_RS24100 and ABIE41_RS24105 are separated by 23 nucleotides
ABIE41_RS24090: ABIE41_RS24090 - cisplatin damage response ATP-dependent DNA ligase, at 4,973,756 to 4,975,393
_RS24090
ABIE41_RS24095: ABIE41_RS24095 - SGNH/GDSL hydrolase family protein, at 4,975,516 to 4,976,283
_RS24095
ABIE41_RS24100: ABIE41_RS24100 - ligase-associated DNA damage response exonuclease, at 4,976,288 to 4,977,370
_RS24100
ABIE41_RS24105: ABIE41_RS24105 - methyltransferase domain-containing protein, at 4,977,394 to 4,978,410
_RS24105
Position (kb)
4976
4977
4978 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4975.314 kb on + strand at 4975.314 kb on + strand at 4975.315 kb on - strand at 4975.356 kb on + strand at 4975.356 kb on + strand at 4975.357 kb on - strand at 4975.490 kb on + strand at 4975.491 kb on - strand at 4975.522 kb on - strand at 4975.742 kb on - strand, within ABIE41_RS24095 at 4976.015 kb on - strand, within ABIE41_RS24095 at 4976.015 kb on - strand, within ABIE41_RS24095 at 4976.053 kb on + strand, within ABIE41_RS24095 at 4976.053 kb on + strand, within ABIE41_RS24095 at 4976.053 kb on + strand, within ABIE41_RS24095 at 4976.053 kb on + strand, within ABIE41_RS24095 at 4976.054 kb on - strand, within ABIE41_RS24095 at 4976.054 kb on - strand, within ABIE41_RS24095 at 4976.184 kb on + strand, within ABIE41_RS24095 at 4976.184 kb on + strand, within ABIE41_RS24095 at 4976.185 kb on - strand, within ABIE41_RS24095 at 4976.185 kb on - strand, within ABIE41_RS24095 at 4976.185 kb on - strand, within ABIE41_RS24095 at 4976.185 kb on - strand, within ABIE41_RS24095 at 4976.281 kb on + strand at 4976.712 kb on + strand, within ABIE41_RS24100 at 4976.712 kb on + strand, within ABIE41_RS24100 at 4976.713 kb on - strand, within ABIE41_RS24100 at 4976.713 kb on - strand, within ABIE41_RS24100 at 4976.713 kb on - strand, within ABIE41_RS24100 at 4976.748 kb on + strand, within ABIE41_RS24100 at 4976.748 kb on + strand, within ABIE41_RS24100 at 4976.815 kb on - strand, within ABIE41_RS24100 at 4976.827 kb on + strand, within ABIE41_RS24100 at 4976.827 kb on + strand, within ABIE41_RS24100 at 4976.828 kb on - strand, within ABIE41_RS24100 at 4976.828 kb on - strand, within ABIE41_RS24100 at 4976.828 kb on - strand, within ABIE41_RS24100 at 4976.991 kb on + strand, within ABIE41_RS24100 at 4976.991 kb on + strand, within ABIE41_RS24100 at 4977.053 kb on + strand, within ABIE41_RS24100 at 4977.053 kb on + strand, within ABIE41_RS24100 at 4977.054 kb on - strand, within ABIE41_RS24100 at 4977.054 kb on - strand, within ABIE41_RS24100 at 4977.155 kb on + strand, within ABIE41_RS24100 at 4977.156 kb on - strand, within ABIE41_RS24100 at 4977.156 kb on - strand, within ABIE41_RS24100 at 4977.156 kb on - strand, within ABIE41_RS24100 at 4977.273 kb on + strand at 4977.273 kb on + strand at 4977.273 kb on + strand at 4977.274 kb on - strand at 4977.274 kb on - strand at 4977.370 kb on + strand at 4977.370 kb on + strand at 4977.370 kb on + strand at 4977.370 kb on + strand at 4977.370 kb on + strand at 4977.370 kb on + strand at 4977.371 kb on - strand at 4977.371 kb on - strand at 4977.371 kb on - strand at 4977.371 kb on - strand at 4977.371 kb on - strand at 4977.371 kb on - strand at 4977.371 kb on - strand at 4977.381 kb on + strand at 4977.381 kb on + strand at 4977.382 kb on - strand at 4977.538 kb on + strand, within ABIE41_RS24105 at 4977.538 kb on + strand, within ABIE41_RS24105 at 4977.539 kb on - strand, within ABIE41_RS24105 at 4977.565 kb on + strand, within ABIE41_RS24105 at 4977.565 kb on + strand, within ABIE41_RS24105 at 4977.566 kb on - strand, within ABIE41_RS24105 at 4977.742 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.785 kb on - strand, within ABIE41_RS24105 at 4977.785 kb on - strand, within ABIE41_RS24105 at 4977.785 kb on - strand, within ABIE41_RS24105 at 4977.785 kb on - strand, within ABIE41_RS24105 at 4977.785 kb on - strand, within ABIE41_RS24105 at 4978.001 kb on - strand, within ABIE41_RS24105 at 4978.001 kb on - strand, within ABIE41_RS24105 at 4978.094 kb on - strand, within ABIE41_RS24105 at 4978.094 kb on - strand, within ABIE41_RS24105 at 4978.094 kb on - strand, within ABIE41_RS24105
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM remove 4,975,314 + -1.2 4,975,314 + -0.1 4,975,315 - -1.2 4,975,356 + +0.1 4,975,356 + +0.7 4,975,357 - +0.4 4,975,490 + +0.2 4,975,491 - +0.4 4,975,522 - +0.9 4,975,742 - ABIE41_RS24095 0.29 -0.4 4,976,015 - ABIE41_RS24095 0.65 -0.0 4,976,015 - ABIE41_RS24095 0.65 -1.9 4,976,053 + ABIE41_RS24095 0.70 +0.4 4,976,053 + ABIE41_RS24095 0.70 -1.4 4,976,053 + ABIE41_RS24095 0.70 +0.6 4,976,053 + ABIE41_RS24095 0.70 -0.6 4,976,054 - ABIE41_RS24095 0.70 -0.7 4,976,054 - ABIE41_RS24095 0.70 -0.6 4,976,184 + ABIE41_RS24095 0.87 -0.1 4,976,184 + ABIE41_RS24095 0.87 -1.2 4,976,185 - ABIE41_RS24095 0.87 -1.0 4,976,185 - ABIE41_RS24095 0.87 +1.1 4,976,185 - ABIE41_RS24095 0.87 -0.9 4,976,185 - ABIE41_RS24095 0.87 +2.2 4,976,281 + +0.9 4,976,712 + ABIE41_RS24100 0.39 +2.2 4,976,712 + ABIE41_RS24100 0.39 -0.1 4,976,713 - ABIE41_RS24100 0.39 +0.5 4,976,713 - ABIE41_RS24100 0.39 -0.3 4,976,713 - ABIE41_RS24100 0.39 +0.4 4,976,748 + ABIE41_RS24100 0.42 +0.6 4,976,748 + ABIE41_RS24100 0.42 +0.2 4,976,815 - ABIE41_RS24100 0.49 +1.0 4,976,827 + ABIE41_RS24100 0.50 -0.1 4,976,827 + ABIE41_RS24100 0.50 -1.4 4,976,828 - ABIE41_RS24100 0.50 +0.5 4,976,828 - ABIE41_RS24100 0.50 -1.5 4,976,828 - ABIE41_RS24100 0.50 +0.7 4,976,991 + ABIE41_RS24100 0.65 +0.1 4,976,991 + ABIE41_RS24100 0.65 -0.7 4,977,053 + ABIE41_RS24100 0.71 -0.2 4,977,053 + ABIE41_RS24100 0.71 +0.8 4,977,054 - ABIE41_RS24100 0.71 +0.1 4,977,054 - ABIE41_RS24100 0.71 -0.6 4,977,155 + ABIE41_RS24100 0.80 +0.4 4,977,156 - ABIE41_RS24100 0.80 +2.2 4,977,156 - ABIE41_RS24100 0.80 +0.4 4,977,156 - ABIE41_RS24100 0.80 +0.4 4,977,273 + +0.9 4,977,273 + +0.5 4,977,273 + +1.1 4,977,274 - -0.2 4,977,274 - +0.3 4,977,370 + -0.9 4,977,370 + -1.1 4,977,370 + +0.5 4,977,370 + -0.3 4,977,370 + +0.9 4,977,370 + +0.8 4,977,371 - +0.4 4,977,371 - -0.4 4,977,371 - +0.1 4,977,371 - +0.1 4,977,371 - +0.6 4,977,371 - -0.1 4,977,371 - +0.1 4,977,381 + +1.8 4,977,381 + -0.1 4,977,382 - -0.1 4,977,538 + ABIE41_RS24105 0.14 -1.3 4,977,538 + ABIE41_RS24105 0.14 -0.8 4,977,539 - ABIE41_RS24105 0.14 +0.5 4,977,565 + ABIE41_RS24105 0.17 -1.0 4,977,565 + ABIE41_RS24105 0.17 -2.3 4,977,566 - ABIE41_RS24105 0.17 +0.8 4,977,742 + ABIE41_RS24105 0.34 +0.9 4,977,784 + ABIE41_RS24105 0.38 -1.0 4,977,784 + ABIE41_RS24105 0.38 -0.2 4,977,784 + ABIE41_RS24105 0.38 +0.4 4,977,784 + ABIE41_RS24105 0.38 +0.1 4,977,784 + ABIE41_RS24105 0.38 -1.8 4,977,784 + ABIE41_RS24105 0.38 +0.1 4,977,784 + ABIE41_RS24105 0.38 +3.8 4,977,784 + ABIE41_RS24105 0.38 +0.3 4,977,785 - ABIE41_RS24105 0.38 +0.3 4,977,785 - ABIE41_RS24105 0.38 +0.2 4,977,785 - ABIE41_RS24105 0.38 -0.2 4,977,785 - ABIE41_RS24105 0.38 -0.6 4,977,785 - ABIE41_RS24105 0.38 +0.2 4,978,001 - ABIE41_RS24105 0.60 -0.4 4,978,001 - ABIE41_RS24105 0.60 -0.2 4,978,094 - ABIE41_RS24105 0.69 -0.1 4,978,094 - ABIE41_RS24105 0.69 -0.5 4,978,094 - ABIE41_RS24105 0.69 -0.1
Or see this region's nucleotide sequence