Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20120 and ABIE41_RS20125 are separated by 37 nucleotides ABIE41_RS20125 and ABIE41_RS20130 overlap by 4 nucleotides ABIE41_RS20130 and ABIE41_RS20135 overlap by 4 nucleotides
ABIE41_RS20120: ABIE41_RS20120 - MarR family transcriptional regulator, at 4,137,072 to 4,137,629
_RS20120
ABIE41_RS20125: ABIE41_RS20125 - DUF4166 domain-containing protein, at 4,137,667 to 4,138,335
_RS20125
ABIE41_RS20130: ABIE41_RS20130 - thiol-disulfide oxidoreductase DCC family protein, at 4,138,332 to 4,138,748
_RS20130
ABIE41_RS20135: ABIE41_RS20135 - SDR family oxidoreductase, at 4,138,745 to 4,140,466
_RS20135
Position (kb) 4138
4139 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4137.361 kb on + strand, within ABIE41_RS20120 at 4137.361 kb on + strand, within ABIE41_RS20120 at 4137.361 kb on + strand, within ABIE41_RS20120 at 4137.361 kb on + strand, within ABIE41_RS20120 at 4137.361 kb on + strand, within ABIE41_RS20120 at 4137.362 kb on - strand, within ABIE41_RS20120 at 4137.607 kb on - strand at 4137.664 kb on + strand at 4137.838 kb on + strand, within ABIE41_RS20125 at 4137.838 kb on + strand, within ABIE41_RS20125 at 4137.838 kb on + strand, within ABIE41_RS20125 at 4137.838 kb on + strand, within ABIE41_RS20125 at 4137.839 kb on - strand, within ABIE41_RS20125 at 4138.081 kb on + strand, within ABIE41_RS20125 at 4138.081 kb on + strand, within ABIE41_RS20125 at 4138.081 kb on + strand, within ABIE41_RS20125 at 4138.081 kb on + strand, within ABIE41_RS20125 at 4138.082 kb on - strand, within ABIE41_RS20125 at 4138.082 kb on - strand, within ABIE41_RS20125 at 4138.082 kb on - strand, within ABIE41_RS20125 at 4138.082 kb on - strand, within ABIE41_RS20125 at 4138.082 kb on - strand, within ABIE41_RS20125 at 4138.301 kb on - strand at 4138.359 kb on + strand at 4138.359 kb on + strand at 4138.359 kb on + strand at 4138.360 kb on - strand at 4138.398 kb on + strand, within ABIE41_RS20130 at 4138.613 kb on - strand, within ABIE41_RS20130 at 4138.641 kb on + strand, within ABIE41_RS20130 at 4138.641 kb on + strand, within ABIE41_RS20130 at 4138.977 kb on + strand, within ABIE41_RS20135 at 4138.977 kb on + strand, within ABIE41_RS20135 at 4139.078 kb on + strand, within ABIE41_RS20135 at 4139.078 kb on + strand, within ABIE41_RS20135 at 4139.079 kb on - strand, within ABIE41_RS20135 at 4139.079 kb on - strand, within ABIE41_RS20135 at 4139.079 kb on - strand, within ABIE41_RS20135 at 4139.079 kb on - strand, within ABIE41_RS20135 at 4139.079 kb on - strand, within ABIE41_RS20135 at 4139.133 kb on + strand, within ABIE41_RS20135 at 4139.134 kb on - strand, within ABIE41_RS20135 at 4139.288 kb on + strand, within ABIE41_RS20135 at 4139.288 kb on + strand, within ABIE41_RS20135 at 4139.289 kb on - strand, within ABIE41_RS20135 at 4139.289 kb on - strand, within ABIE41_RS20135
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM remove 4,137,361 + ABIE41_RS20120 0.52 -1.5 4,137,361 + ABIE41_RS20120 0.52 -1.5 4,137,361 + ABIE41_RS20120 0.52 +0.2 4,137,361 + ABIE41_RS20120 0.52 -0.1 4,137,361 + ABIE41_RS20120 0.52 -0.4 4,137,362 - ABIE41_RS20120 0.52 -1.4 4,137,607 - +0.2 4,137,664 + -0.2 4,137,838 + ABIE41_RS20125 0.26 -1.7 4,137,838 + ABIE41_RS20125 0.26 +1.0 4,137,838 + ABIE41_RS20125 0.26 -0.4 4,137,838 + ABIE41_RS20125 0.26 +1.6 4,137,839 - ABIE41_RS20125 0.26 +0.2 4,138,081 + ABIE41_RS20125 0.62 +1.1 4,138,081 + ABIE41_RS20125 0.62 -0.5 4,138,081 + ABIE41_RS20125 0.62 -1.0 4,138,081 + ABIE41_RS20125 0.62 +1.8 4,138,082 - ABIE41_RS20125 0.62 +0.0 4,138,082 - ABIE41_RS20125 0.62 -3.2 4,138,082 - ABIE41_RS20125 0.62 -3.1 4,138,082 - ABIE41_RS20125 0.62 -0.8 4,138,082 - ABIE41_RS20125 0.62 -0.1 4,138,301 - -0.2 4,138,359 + -0.8 4,138,359 + +0.6 4,138,359 + +1.0 4,138,360 - -0.3 4,138,398 + ABIE41_RS20130 0.16 +0.2 4,138,613 - ABIE41_RS20130 0.67 -0.6 4,138,641 + ABIE41_RS20130 0.74 -1.4 4,138,641 + ABIE41_RS20130 0.74 -1.0 4,138,977 + ABIE41_RS20135 0.13 -0.7 4,138,977 + ABIE41_RS20135 0.13 -0.5 4,139,078 + ABIE41_RS20135 0.19 -2.2 4,139,078 + ABIE41_RS20135 0.19 +1.3 4,139,079 - ABIE41_RS20135 0.19 -0.4 4,139,079 - ABIE41_RS20135 0.19 -1.0 4,139,079 - ABIE41_RS20135 0.19 -0.5 4,139,079 - ABIE41_RS20135 0.19 +0.1 4,139,079 - ABIE41_RS20135 0.19 -0.7 4,139,133 + ABIE41_RS20135 0.23 +0.6 4,139,134 - ABIE41_RS20135 0.23 -0.2 4,139,288 + ABIE41_RS20135 0.32 -0.1 4,139,288 + ABIE41_RS20135 0.32 -1.4 4,139,289 - ABIE41_RS20135 0.32 +0.0 4,139,289 - ABIE41_RS20135 0.32 -4.2
Or see this region's nucleotide sequence