Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16370

Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS16360 and ABIE41_RS16365 are separated by 4 nucleotidesABIE41_RS16365 and ABIE41_RS16370 are separated by 68 nucleotidesABIE41_RS16370 and ABIE41_RS16375 overlap by 1 nucleotidesABIE41_RS16375 and ABIE41_RS16380 overlap by 4 nucleotides ABIE41_RS16360: ABIE41_RS16360 - alkaline phosphatase family protein, at 3,363,214 to 3,364,686 _RS16360 ABIE41_RS16365: ABIE41_RS16365 - ABC transporter permease, at 3,364,691 to 3,365,494 _RS16365 ABIE41_RS16370: ABIE41_RS16370 - ABC transporter permease, at 3,365,563 to 3,366,495 _RS16370 ABIE41_RS16375: ABIE41_RS16375 - oligopeptide/dipeptide ABC transporter ATP-binding protein, at 3,366,495 to 3,367,496 _RS16375 ABIE41_RS16380: ABIE41_RS16380 - ABC transporter ATP-binding protein, at 3,367,493 to 3,368,485 _RS16380 Position (kb) 3365 3366 3367Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3364.692 kb on + strandat 3364.693 kb on - strandat 3364.693 kb on - strandat 3364.809 kb on + strand, within ABIE41_RS16365at 3364.809 kb on + strand, within ABIE41_RS16365at 3364.809 kb on + strand, within ABIE41_RS16365at 3364.810 kb on - strand, within ABIE41_RS16365at 3364.810 kb on - strand, within ABIE41_RS16365at 3364.810 kb on - strand, within ABIE41_RS16365at 3364.810 kb on - strand, within ABIE41_RS16365at 3364.810 kb on - strand, within ABIE41_RS16365at 3364.843 kb on + strand, within ABIE41_RS16365at 3364.844 kb on - strand, within ABIE41_RS16365at 3364.844 kb on - strand, within ABIE41_RS16365at 3364.949 kb on - strand, within ABIE41_RS16365at 3364.971 kb on + strand, within ABIE41_RS16365at 3364.971 kb on + strand, within ABIE41_RS16365at 3364.972 kb on - strand, within ABIE41_RS16365at 3365.016 kb on + strand, within ABIE41_RS16365at 3365.017 kb on - strand, within ABIE41_RS16365at 3365.065 kb on - strand, within ABIE41_RS16365at 3365.217 kb on + strand, within ABIE41_RS16365at 3365.217 kb on + strand, within ABIE41_RS16365at 3365.406 kb on + strand, within ABIE41_RS16365at 3365.407 kb on - strand, within ABIE41_RS16365at 3365.613 kb on - strandat 3365.994 kb on + strand, within ABIE41_RS16370at 3365.994 kb on + strand, within ABIE41_RS16370at 3366.143 kb on + strand, within ABIE41_RS16370at 3366.143 kb on + strand, within ABIE41_RS16370at 3366.143 kb on + strand, within ABIE41_RS16370at 3366.144 kb on - strand, within ABIE41_RS16370at 3366.144 kb on - strand, within ABIE41_RS16370at 3366.144 kb on - strand, within ABIE41_RS16370at 3366.144 kb on - strand, within ABIE41_RS16370at 3366.144 kb on - strand, within ABIE41_RS16370at 3366.144 kb on - strand, within ABIE41_RS16370at 3366.296 kb on + strand, within ABIE41_RS16370at 3366.305 kb on + strand, within ABIE41_RS16370at 3366.306 kb on - strand, within ABIE41_RS16370at 3366.306 kb on - strand, within ABIE41_RS16370at 3366.306 kb on - strand, within ABIE41_RS16370at 3366.486 kb on - strandat 3366.747 kb on - strand, within ABIE41_RS16375at 3366.811 kb on + strand, within ABIE41_RS16375at 3366.811 kb on + strand, within ABIE41_RS16375at 3366.811 kb on + strand, within ABIE41_RS16375at 3366.811 kb on + strand, within ABIE41_RS16375at 3366.811 kb on + strand, within ABIE41_RS16375at 3366.811 kb on + strand, within ABIE41_RS16375at 3366.811 kb on + strand, within ABIE41_RS16375at 3366.812 kb on - strand, within ABIE41_RS16375at 3366.812 kb on - strand, within ABIE41_RS16375at 3366.812 kb on - strand, within ABIE41_RS16375at 3366.864 kb on + strand, within ABIE41_RS16375at 3366.864 kb on + strand, within ABIE41_RS16375at 3366.864 kb on + strand, within ABIE41_RS16375at 3366.864 kb on + strand, within ABIE41_RS16375at 3366.864 kb on + strand, within ABIE41_RS16375at 3366.864 kb on + strand, within ABIE41_RS16375at 3366.864 kb on + strand, within ABIE41_RS16375at 3366.865 kb on - strand, within ABIE41_RS16375at 3367.204 kb on + strand, within ABIE41_RS16375at 3367.204 kb on + strand, within ABIE41_RS16375at 3367.204 kb on + strand, within ABIE41_RS16375at 3367.204 kb on + strand, within ABIE41_RS16375at 3367.204 kb on + strand, within ABIE41_RS16375at 3367.205 kb on - strand, within ABIE41_RS16375at 3367.205 kb on - strand, within ABIE41_RS16375at 3367.205 kb on - strand, within ABIE41_RS16375at 3367.453 kb on + strandat 3367.454 kb on - strandat 3367.454 kb on - strandat 3367.454 kb on - strandat 3367.454 kb on - strandat 3367.454 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM
remove
3,364,692 + +1.4
3,364,693 - -1.3
3,364,693 - +0.7
3,364,809 + ABIE41_RS16365 0.15 +1.1
3,364,809 + ABIE41_RS16365 0.15 +2.3
3,364,809 + ABIE41_RS16365 0.15 +0.4
3,364,810 - ABIE41_RS16365 0.15 +0.1
3,364,810 - ABIE41_RS16365 0.15 -0.4
3,364,810 - ABIE41_RS16365 0.15 -0.5
3,364,810 - ABIE41_RS16365 0.15 -0.4
3,364,810 - ABIE41_RS16365 0.15 +0.5
3,364,843 + ABIE41_RS16365 0.19 +0.2
3,364,844 - ABIE41_RS16365 0.19 -1.3
3,364,844 - ABIE41_RS16365 0.19 +0.9
3,364,949 - ABIE41_RS16365 0.32 +1.7
3,364,971 + ABIE41_RS16365 0.35 +0.2
3,364,971 + ABIE41_RS16365 0.35 +0.3
3,364,972 - ABIE41_RS16365 0.35 +1.3
3,365,016 + ABIE41_RS16365 0.40 -0.5
3,365,017 - ABIE41_RS16365 0.41 +1.1
3,365,065 - ABIE41_RS16365 0.47 -0.5
3,365,217 + ABIE41_RS16365 0.65 +0.3
3,365,217 + ABIE41_RS16365 0.65 +0.8
3,365,406 + ABIE41_RS16365 0.89 -0.4
3,365,407 - ABIE41_RS16365 0.89 +0.1
3,365,613 - +0.6
3,365,994 + ABIE41_RS16370 0.46 +1.7
3,365,994 + ABIE41_RS16370 0.46 +0.9
3,366,143 + ABIE41_RS16370 0.62 -0.7
3,366,143 + ABIE41_RS16370 0.62 -0.5
3,366,143 + ABIE41_RS16370 0.62 -0.4
3,366,144 - ABIE41_RS16370 0.62 +0.2
3,366,144 - ABIE41_RS16370 0.62 +0.9
3,366,144 - ABIE41_RS16370 0.62 +0.1
3,366,144 - ABIE41_RS16370 0.62 -0.7
3,366,144 - ABIE41_RS16370 0.62 +0.3
3,366,144 - ABIE41_RS16370 0.62 +1.4
3,366,296 + ABIE41_RS16370 0.79 -0.7
3,366,305 + ABIE41_RS16370 0.80 +1.0
3,366,306 - ABIE41_RS16370 0.80 -0.4
3,366,306 - ABIE41_RS16370 0.80 +0.2
3,366,306 - ABIE41_RS16370 0.80 +0.5
3,366,486 - -0.7
3,366,747 - ABIE41_RS16375 0.25 +0.4
3,366,811 + ABIE41_RS16375 0.32 +0.2
3,366,811 + ABIE41_RS16375 0.32 +0.3
3,366,811 + ABIE41_RS16375 0.32 +0.1
3,366,811 + ABIE41_RS16375 0.32 +0.9
3,366,811 + ABIE41_RS16375 0.32 -0.2
3,366,811 + ABIE41_RS16375 0.32 -0.4
3,366,811 + ABIE41_RS16375 0.32 -3.2
3,366,812 - ABIE41_RS16375 0.32 -0.1
3,366,812 - ABIE41_RS16375 0.32 -1.9
3,366,812 - ABIE41_RS16375 0.32 +0.7
3,366,864 + ABIE41_RS16375 0.37 -0.4
3,366,864 + ABIE41_RS16375 0.37 -1.5
3,366,864 + ABIE41_RS16375 0.37 +0.2
3,366,864 + ABIE41_RS16375 0.37 -0.1
3,366,864 + ABIE41_RS16375 0.37 +0.2
3,366,864 + ABIE41_RS16375 0.37 +0.3
3,366,864 + ABIE41_RS16375 0.37 -1.0
3,366,865 - ABIE41_RS16375 0.37 -1.0
3,367,204 + ABIE41_RS16375 0.71 -0.1
3,367,204 + ABIE41_RS16375 0.71 -0.3
3,367,204 + ABIE41_RS16375 0.71 +0.8
3,367,204 + ABIE41_RS16375 0.71 -0.1
3,367,204 + ABIE41_RS16375 0.71 +1.3
3,367,205 - ABIE41_RS16375 0.71 +1.1
3,367,205 - ABIE41_RS16375 0.71 +1.3
3,367,205 - ABIE41_RS16375 0.71 -1.0
3,367,453 + -0.1
3,367,454 - -0.2
3,367,454 - +0.3
3,367,454 - -0.4
3,367,454 - -0.6
3,367,454 - +0.1

Or see this region's nucleotide sequence