Experiment: R2A with 1-octen-3-ol 0.493390333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS16360 and ABIE41_RS16365 are separated by 4 nucleotides ABIE41_RS16365 and ABIE41_RS16370 are separated by 68 nucleotides ABIE41_RS16370 and ABIE41_RS16375 overlap by 1 nucleotides ABIE41_RS16375 and ABIE41_RS16380 overlap by 4 nucleotides
ABIE41_RS16360: ABIE41_RS16360 - alkaline phosphatase family protein, at 3,363,214 to 3,364,686
_RS16360
ABIE41_RS16365: ABIE41_RS16365 - ABC transporter permease, at 3,364,691 to 3,365,494
_RS16365
ABIE41_RS16370: ABIE41_RS16370 - ABC transporter permease, at 3,365,563 to 3,366,495
_RS16370
ABIE41_RS16375: ABIE41_RS16375 - oligopeptide/dipeptide ABC transporter ATP-binding protein, at 3,366,495 to 3,367,496
_RS16375
ABIE41_RS16380: ABIE41_RS16380 - ABC transporter ATP-binding protein, at 3,367,493 to 3,368,485
_RS16380
Position (kb)
3365
3366
3367 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3364.692 kb on + strand at 3364.693 kb on - strand at 3364.693 kb on - strand at 3364.809 kb on + strand, within ABIE41_RS16365 at 3364.809 kb on + strand, within ABIE41_RS16365 at 3364.809 kb on + strand, within ABIE41_RS16365 at 3364.810 kb on - strand, within ABIE41_RS16365 at 3364.810 kb on - strand, within ABIE41_RS16365 at 3364.810 kb on - strand, within ABIE41_RS16365 at 3364.810 kb on - strand, within ABIE41_RS16365 at 3364.810 kb on - strand, within ABIE41_RS16365 at 3364.843 kb on + strand, within ABIE41_RS16365 at 3364.844 kb on - strand, within ABIE41_RS16365 at 3364.844 kb on - strand, within ABIE41_RS16365 at 3364.949 kb on - strand, within ABIE41_RS16365 at 3364.971 kb on + strand, within ABIE41_RS16365 at 3364.971 kb on + strand, within ABIE41_RS16365 at 3364.972 kb on - strand, within ABIE41_RS16365 at 3365.016 kb on + strand, within ABIE41_RS16365 at 3365.017 kb on - strand, within ABIE41_RS16365 at 3365.065 kb on - strand, within ABIE41_RS16365 at 3365.217 kb on + strand, within ABIE41_RS16365 at 3365.217 kb on + strand, within ABIE41_RS16365 at 3365.406 kb on + strand, within ABIE41_RS16365 at 3365.407 kb on - strand, within ABIE41_RS16365 at 3365.613 kb on - strand at 3365.994 kb on + strand, within ABIE41_RS16370 at 3365.994 kb on + strand, within ABIE41_RS16370 at 3366.143 kb on + strand, within ABIE41_RS16370 at 3366.143 kb on + strand, within ABIE41_RS16370 at 3366.143 kb on + strand, within ABIE41_RS16370 at 3366.144 kb on - strand, within ABIE41_RS16370 at 3366.144 kb on - strand, within ABIE41_RS16370 at 3366.144 kb on - strand, within ABIE41_RS16370 at 3366.144 kb on - strand, within ABIE41_RS16370 at 3366.144 kb on - strand, within ABIE41_RS16370 at 3366.144 kb on - strand, within ABIE41_RS16370 at 3366.296 kb on + strand, within ABIE41_RS16370 at 3366.305 kb on + strand, within ABIE41_RS16370 at 3366.306 kb on - strand, within ABIE41_RS16370 at 3366.306 kb on - strand, within ABIE41_RS16370 at 3366.306 kb on - strand, within ABIE41_RS16370 at 3366.486 kb on - strand at 3366.747 kb on - strand, within ABIE41_RS16375 at 3366.811 kb on + strand, within ABIE41_RS16375 at 3366.811 kb on + strand, within ABIE41_RS16375 at 3366.811 kb on + strand, within ABIE41_RS16375 at 3366.811 kb on + strand, within ABIE41_RS16375 at 3366.811 kb on + strand, within ABIE41_RS16375 at 3366.811 kb on + strand, within ABIE41_RS16375 at 3366.811 kb on + strand, within ABIE41_RS16375 at 3366.812 kb on - strand, within ABIE41_RS16375 at 3366.812 kb on - strand, within ABIE41_RS16375 at 3366.812 kb on - strand, within ABIE41_RS16375 at 3366.864 kb on + strand, within ABIE41_RS16375 at 3366.864 kb on + strand, within ABIE41_RS16375 at 3366.864 kb on + strand, within ABIE41_RS16375 at 3366.864 kb on + strand, within ABIE41_RS16375 at 3366.864 kb on + strand, within ABIE41_RS16375 at 3366.864 kb on + strand, within ABIE41_RS16375 at 3366.864 kb on + strand, within ABIE41_RS16375 at 3366.865 kb on - strand, within ABIE41_RS16375 at 3367.204 kb on + strand, within ABIE41_RS16375 at 3367.204 kb on + strand, within ABIE41_RS16375 at 3367.204 kb on + strand, within ABIE41_RS16375 at 3367.204 kb on + strand, within ABIE41_RS16375 at 3367.204 kb on + strand, within ABIE41_RS16375 at 3367.205 kb on - strand, within ABIE41_RS16375 at 3367.205 kb on - strand, within ABIE41_RS16375 at 3367.205 kb on - strand, within ABIE41_RS16375 at 3367.453 kb on + strand at 3367.454 kb on - strand at 3367.454 kb on - strand at 3367.454 kb on - strand at 3367.454 kb on - strand at 3367.454 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.493390333333333 mM remove 3,364,692 + +1.4 3,364,693 - -1.3 3,364,693 - +0.7 3,364,809 + ABIE41_RS16365 0.15 +1.1 3,364,809 + ABIE41_RS16365 0.15 +2.3 3,364,809 + ABIE41_RS16365 0.15 +0.4 3,364,810 - ABIE41_RS16365 0.15 +0.1 3,364,810 - ABIE41_RS16365 0.15 -0.4 3,364,810 - ABIE41_RS16365 0.15 -0.5 3,364,810 - ABIE41_RS16365 0.15 -0.4 3,364,810 - ABIE41_RS16365 0.15 +0.5 3,364,843 + ABIE41_RS16365 0.19 +0.2 3,364,844 - ABIE41_RS16365 0.19 -1.3 3,364,844 - ABIE41_RS16365 0.19 +0.9 3,364,949 - ABIE41_RS16365 0.32 +1.7 3,364,971 + ABIE41_RS16365 0.35 +0.2 3,364,971 + ABIE41_RS16365 0.35 +0.3 3,364,972 - ABIE41_RS16365 0.35 +1.3 3,365,016 + ABIE41_RS16365 0.40 -0.5 3,365,017 - ABIE41_RS16365 0.41 +1.1 3,365,065 - ABIE41_RS16365 0.47 -0.5 3,365,217 + ABIE41_RS16365 0.65 +0.3 3,365,217 + ABIE41_RS16365 0.65 +0.8 3,365,406 + ABIE41_RS16365 0.89 -0.4 3,365,407 - ABIE41_RS16365 0.89 +0.1 3,365,613 - +0.6 3,365,994 + ABIE41_RS16370 0.46 +1.7 3,365,994 + ABIE41_RS16370 0.46 +0.9 3,366,143 + ABIE41_RS16370 0.62 -0.7 3,366,143 + ABIE41_RS16370 0.62 -0.5 3,366,143 + ABIE41_RS16370 0.62 -0.4 3,366,144 - ABIE41_RS16370 0.62 +0.2 3,366,144 - ABIE41_RS16370 0.62 +0.9 3,366,144 - ABIE41_RS16370 0.62 +0.1 3,366,144 - ABIE41_RS16370 0.62 -0.7 3,366,144 - ABIE41_RS16370 0.62 +0.3 3,366,144 - ABIE41_RS16370 0.62 +1.4 3,366,296 + ABIE41_RS16370 0.79 -0.7 3,366,305 + ABIE41_RS16370 0.80 +1.0 3,366,306 - ABIE41_RS16370 0.80 -0.4 3,366,306 - ABIE41_RS16370 0.80 +0.2 3,366,306 - ABIE41_RS16370 0.80 +0.5 3,366,486 - -0.7 3,366,747 - ABIE41_RS16375 0.25 +0.4 3,366,811 + ABIE41_RS16375 0.32 +0.2 3,366,811 + ABIE41_RS16375 0.32 +0.3 3,366,811 + ABIE41_RS16375 0.32 +0.1 3,366,811 + ABIE41_RS16375 0.32 +0.9 3,366,811 + ABIE41_RS16375 0.32 -0.2 3,366,811 + ABIE41_RS16375 0.32 -0.4 3,366,811 + ABIE41_RS16375 0.32 -3.2 3,366,812 - ABIE41_RS16375 0.32 -0.1 3,366,812 - ABIE41_RS16375 0.32 -1.9 3,366,812 - ABIE41_RS16375 0.32 +0.7 3,366,864 + ABIE41_RS16375 0.37 -0.4 3,366,864 + ABIE41_RS16375 0.37 -1.5 3,366,864 + ABIE41_RS16375 0.37 +0.2 3,366,864 + ABIE41_RS16375 0.37 -0.1 3,366,864 + ABIE41_RS16375 0.37 +0.2 3,366,864 + ABIE41_RS16375 0.37 +0.3 3,366,864 + ABIE41_RS16375 0.37 -1.0 3,366,865 - ABIE41_RS16375 0.37 -1.0 3,367,204 + ABIE41_RS16375 0.71 -0.1 3,367,204 + ABIE41_RS16375 0.71 -0.3 3,367,204 + ABIE41_RS16375 0.71 +0.8 3,367,204 + ABIE41_RS16375 0.71 -0.1 3,367,204 + ABIE41_RS16375 0.71 +1.3 3,367,205 - ABIE41_RS16375 0.71 +1.1 3,367,205 - ABIE41_RS16375 0.71 +1.3 3,367,205 - ABIE41_RS16375 0.71 -1.0 3,367,453 + -0.1 3,367,454 - -0.2 3,367,454 - +0.3 3,367,454 - -0.4 3,367,454 - -0.6 3,367,454 - +0.1
Or see this region's nucleotide sequence