Strain Fitness in Pseudomonas sp. RS175 around PFR28_04455

Experiment: sn-glycero-3-phosphocholine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sn-glycero-3-phosphocholine (C)
5,073,156	+		PFR28_04454	0.63	-1.0
5,073,157	-		PFR28_04454	0.63	-1.9
5,073,284	+		PFR28_04454	0.72	-1.6
5,073,284	+		PFR28_04454	0.72	-1.9
5,073,285	-		PFR28_04454	0.72	-0.0
5,073,285	-		PFR28_04454	0.72	-0.5
5,073,285	-		PFR28_04454	0.72	-2.3
5,073,397	+		PFR28_04454	0.80	-0.7
5,073,397	+		PFR28_04454	0.80	-0.1
5,073,398	-		PFR28_04454	0.80	-1.2
5,073,398	-		PFR28_04454	0.80	-2.0
5,073,508	+		PFR28_04454	0.87	-0.0
5,073,508	+		PFR28_04454	0.87	-0.1
5,073,508	+		PFR28_04454	0.87	-1.2
5,073,508	+		PFR28_04454	0.87	-0.8
5,073,508	+		PFR28_04454	0.87	-0.5
5,073,508	+		PFR28_04454	0.87	-0.5
5,073,508	+		PFR28_04454	0.87	+0.5
5,073,509	-		PFR28_04454	0.87	+0.5
5,073,509	-		PFR28_04454	0.87	-1.9
5,073,509	-		PFR28_04454	0.87	+0.1
5,073,509	-		PFR28_04454	0.87	+0.4
5,073,511	+		PFR28_04454	0.88	-0.5
5,073,526	+		PFR28_04454	0.89	-1.2
5,073,526	+		PFR28_04454	0.89	-0.9
5,073,526	+		PFR28_04454	0.89	-0.3
5,073,527	-		PFR28_04454	0.89	-0.4
5,073,527	-		PFR28_04454	0.89	-1.2
5,073,527	-		PFR28_04454	0.89	-0.5
5,073,527	-		PFR28_04454	0.89	-0.1
5,073,527	-		PFR28_04454	0.89	-0.5
5,073,533	+		PFR28_04454	0.89	+0.6
5,073,573	+				-3.0
5,073,576	+				-0.4
5,073,653	+				-0.3
5,073,653	+				-0.9
5,073,653	+				-1.0
5,073,654	-				-0.5
5,073,654	-				+1.8
5,073,654	-				+0.4
5,073,664	+				-1.2
5,073,664	+				-1.5
5,073,664	+				-0.1
5,073,665	-				+1.2
5,073,665	-				-2.4
5,073,668	+				-0.2
5,073,668	+				-0.3
5,073,668	+				-0.6
5,073,668	+				+0.0
5,073,668	+				+0.5
5,073,668	+				-0.8
5,073,668	+				-1.1
5,073,668	+				+1.2
5,073,668	+				-0.4
5,073,668	+				-1.4
5,073,668	+				-1.9
5,073,668	+				-1.9
5,073,668	+				-1.3
5,073,669	-				-1.5
5,073,669	-				+0.4
5,073,669	-				-0.7
5,073,669	-				-3.2
5,073,669	-				-0.4
5,073,669	-				-1.4
5,073,669	-				-1.6
5,073,669	-				-2.0
5,073,669	-				-1.3
5,073,669	-				-0.0
5,073,674	+				-1.8
5,073,674	+				-3.0
5,073,675	-				-0.6
5,073,675	-				+0.0
5,073,675	-				-0.3
5,073,740	+				+0.8
5,073,750	+				-0.6
5,073,750	+				-0.6
5,073,750	+				+0.8
5,073,750	+				-0.9
5,073,750	+				+0.0
5,073,750	+				+0.5
5,073,750	+				-2.9
5,073,750	+				-1.3
5,073,750	+				-0.9
5,073,750	+				-0.8
5,073,750	+				-1.3
5,073,751	-				+0.4
5,073,751	-				+2.1
5,073,751	-				-1.2
5,073,751	-				+1.3
5,073,751	-				-1.0
5,073,751	-				-0.4
5,073,824	+				-0.4
5,073,824	+				+1.6
5,073,824	+				-1.0
5,073,825	-				-0.8
5,073,825	-				+0.8
5,073,825	-				+1.8
5,073,825	-				-0.5
5,073,861	-				+0.9
5,073,861	-				+3.4
5,073,893	+				-0.5
5,073,894	-				+1.2
5,073,910	+				+0.4
5,073,911	-				-0.9
5,073,911	-				+4.6
5,073,924	+				-2.0
5,073,924	+				-0.0
5,073,924	+				-0.8
5,073,924	+				-0.9
5,073,924	+				-1.8
5,073,925	-				-2.0
5,073,925	-				+1.3
5,073,925	-				+1.3
5,073,929	+				-2.0
5,073,929	+				-1.4
5,073,929	+				-2.0
5,073,929	+				-2.1
5,073,929	+				-2.4
5,073,930	-				+1.6
5,073,930	-				+1.6
5,073,930	-				+1.5
5,073,930	-				+0.2
5,073,930	-				+1.8
5,073,930	-				-0.1
5,073,930	-				+2.5
5,073,944	+				-1.2
5,073,944	+				+0.5
5,073,945	-				+1.4
5,073,945	-				+1.1
5,073,948	+				-0.2
5,073,948	+				-0.6
5,073,948	+				-0.7
5,073,948	+				-0.5
5,073,948	+				+0.2
5,073,948	+				+0.0
5,073,948	+				+0.6
5,073,948	+				+0.0
5,073,948	+				-1.1
5,073,948	+				+1.8
5,073,948	+				-2.1
5,073,948	+				-0.1
5,073,948	+				-0.9
5,073,949	-				+0.8
5,073,949	-				+1.1
5,073,949	-				+1.4
5,073,949	-				+1.9
5,073,949	-				+1.9
5,073,949	-				+0.1
5,073,949	-				+0.5
5,073,949	-				+1.6
5,073,949	-				+0.5
5,073,949	-				-1.4
5,073,949	-				-1.8
5,073,951	+				-1.4
5,073,951	+				-0.5
5,073,952	-				+2.0
5,073,952	-				+3.8
5,073,952	-				+2.8
5,073,952	-				-0.1
5,073,952	-				-0.8
5,074,012	+				-0.6
5,074,012	+				-0.3
5,074,012	+				-1.9
5,074,013	-				-0.8
5,074,013	-				+0.8
5,074,013	-				+0.3
5,074,024	-				+2.5
5,074,036	+				+0.6
5,074,036	+				+0.6
5,074,036	+				-0.8
5,074,036	+				-2.4
5,074,037	-				+3.4
5,074,037	-				+2.3
5,074,037	-				+1.6
5,074,037	-				+2.5
5,074,075	+				-0.7
5,074,075	+				-2.6
5,074,075	+				-1.3
5,074,076	-				+1.1
5,074,076	-				+0.1
5,074,076	-				+1.7
5,074,186	+				+0.2
5,074,186	+				-0.6
5,074,186	+				-1.4
5,074,186	+				+1.1
5,074,186	+				-3.2
5,074,186	+				-3.0
5,074,186	+				-0.5
5,074,186	+				-0.6
5,074,187	-				+3.4
5,074,345	+		PFR28_04455	0.21	-1.0
5,074,346	-		PFR28_04455	0.21	+0.2
5,074,346	-		PFR28_04455	0.21	+2.1
5,074,429	+		PFR28_04455	0.29	-0.2
5,074,429	+		PFR28_04455	0.29	+0.1
5,074,430	-		PFR28_04455	0.30	-0.4
5,074,430	-		PFR28_04455	0.30	+1.7
5,074,524	+		PFR28_04455	0.39	+0.5
5,074,778	+		PFR28_04455	0.63	-1.0
5,074,778	+		PFR28_04455	0.63	+0.6
5,074,779	-		PFR28_04455	0.63	-0.2
5,074,779	-		PFR28_04455	0.63	+2.3
5,074,909	+		PFR28_04455	0.76	+0.1
5,074,909	+		PFR28_04455	0.76	+0.0
5,074,909	+		PFR28_04455	0.76	+1.9
5,074,910	-		PFR28_04455	0.76	+0.1
5,074,910	-		PFR28_04455	0.76	-0.1
5,074,939	-		PFR28_04455	0.79	-0.5
5,075,008	+		PFR28_04455	0.85	-2.1
5,075,008	+		PFR28_04455	0.85	-0.2
5,075,008	+		PFR28_04455	0.85	+0.7
5,075,009	-		PFR28_04455	0.85	-3.8
5,075,009	-		PFR28_04455	0.85	+0.7
5,075,011	+		PFR28_04455	0.86	-2.6
5,075,011	+		PFR28_04455	0.86	+0.9
5,075,011	+		PFR28_04455	0.86	-1.0
5,075,011	+		PFR28_04455	0.86	+0.7
5,075,011	+		PFR28_04455	0.86	+0.5
5,075,011	+		PFR28_04455	0.86	+0.3
5,075,011	+		PFR28_04455	0.86	-0.3
5,075,011	+		PFR28_04455	0.86	-1.2
5,075,011	+		PFR28_04455	0.86	+1.0
5,075,011	+		PFR28_04455	0.86	+1.3
5,075,011	+		PFR28_04455	0.86	-0.7
5,075,011	+		PFR28_04455	0.86	+0.4
5,075,012	-		PFR28_04455	0.86	-0.4
5,075,012	-		PFR28_04455	0.86	-1.0
5,075,012	-		PFR28_04455	0.86	+1.1
5,075,012	-		PFR28_04455	0.86	-1.2
5,075,012	-		PFR28_04455	0.86	-0.7
5,075,012	-		PFR28_04455	0.86	+0.7
5,075,012	-		PFR28_04455	0.86	+0.0
5,075,012	-		PFR28_04455	0.86	+1.0
5,075,012	-		PFR28_04455	0.86	-1.1
5,075,012	-		PFR28_04455	0.86	+1.4
5,075,012	-		PFR28_04455	0.86	+0.8
5,075,012	-		PFR28_04455	0.86	-1.1
5,075,100	+				-2.6
5,075,158	+				-1.4
5,075,158	+				-1.0
5,075,306	-		PFR28_04456	0.13	+2.4
5,075,641	+		PFR28_04456	0.79	-0.9
5,075,641	+		PFR28_04456	0.79	+0.6
5,075,641	+		PFR28_04456	0.79	+0.1
5,075,641	+		PFR28_04456	0.79	-2.3
5,075,642	-		PFR28_04456	0.79	-1.6
5,075,642	-		PFR28_04456	0.79	-0.5
5,075,642	-		PFR28_04456	0.79	+1.2
5,075,642	-		PFR28_04456	0.79	-1.0
5,075,642	-		PFR28_04456	0.79	+0.7
5,075,642	-		PFR28_04456	0.79	-1.1
5,075,642	-		PFR28_04456	0.79	+0.1
5,075,642	-		PFR28_04456	0.79	+0.9
5,075,762	+				-0.5
5,075,762	+				-1.5
5,075,762	+				-1.8
5,075,762	+				+0.7
5,075,762	+				+1.0
5,075,762	+				+1.3
5,075,762	+				-0.9
5,075,763	-				-2.2
5,075,763	-				+0.7
5,075,763	-				-1.5
5,075,763	-				-0.7
5,076,057	+		PFR28_04457	0.20	+0.5
5,076,057	+		PFR28_04457	0.20	+0.0
5,076,058	-		PFR28_04457	0.21	+0.3
5,076,058	-		PFR28_04457	0.21	+0.6
5,076,058	-		PFR28_04457	0.21	-0.3
5,076,058	-		PFR28_04457	0.21	-0.8