Strain Fitness in Pseudomonas sp. RS175 around PFR28_01307

Experiment: sn-glycero-3-phosphocholine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_01306 and PFR28_01307 are separated by 102 nucleotidesPFR28_01307 and PFR28_01308 are separated by 254 nucleotidesPFR28_01308 and PFR28_01309 are separated by 173 nucleotides PFR28_01306: PFR28_01306 - hypothetical protein, at 1,419,653 to 1,420,291 _01306 PFR28_01307: PFR28_01307 - hypothetical protein, at 1,420,394 to 1,421,179 _01307 PFR28_01308: PFR28_01308 - hypothetical protein, at 1,421,434 to 1,421,973 _01308 PFR28_01309: PFR28_01309 - Beta-lactamase, at 1,422,147 to 1,423,295 _01309 Position (kb) 1420 1421 1422Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1419.467 kb on + strandat 1419.484 kb on + strandat 1419.484 kb on + strandat 1419.484 kb on + strandat 1419.485 kb on - strandat 1419.752 kb on + strand, within PFR28_01306at 1419.752 kb on + strand, within PFR28_01306at 1419.752 kb on + strand, within PFR28_01306at 1419.753 kb on - strand, within PFR28_01306at 1419.773 kb on + strand, within PFR28_01306at 1419.773 kb on + strand, within PFR28_01306at 1419.773 kb on + strand, within PFR28_01306at 1419.911 kb on + strand, within PFR28_01306at 1419.911 kb on + strand, within PFR28_01306at 1419.911 kb on + strand, within PFR28_01306at 1419.912 kb on - strand, within PFR28_01306at 1419.912 kb on - strand, within PFR28_01306at 1419.912 kb on - strand, within PFR28_01306at 1419.912 kb on - strand, within PFR28_01306at 1419.912 kb on - strand, within PFR28_01306at 1419.912 kb on - strand, within PFR28_01306at 1419.912 kb on - strand, within PFR28_01306at 1419.912 kb on - strand, within PFR28_01306at 1419.912 kb on - strand, within PFR28_01306at 1419.959 kb on + strand, within PFR28_01306at 1419.959 kb on + strand, within PFR28_01306at 1419.959 kb on + strand, within PFR28_01306at 1419.959 kb on + strand, within PFR28_01306at 1419.960 kb on - strand, within PFR28_01306at 1419.960 kb on - strand, within PFR28_01306at 1419.960 kb on - strand, within PFR28_01306at 1419.960 kb on - strand, within PFR28_01306at 1419.960 kb on - strand, within PFR28_01306at 1420.010 kb on + strand, within PFR28_01306at 1420.010 kb on + strand, within PFR28_01306at 1420.010 kb on + strand, within PFR28_01306at 1420.010 kb on + strand, within PFR28_01306at 1420.010 kb on + strand, within PFR28_01306at 1420.010 kb on + strand, within PFR28_01306at 1420.010 kb on + strand, within PFR28_01306at 1420.011 kb on - strand, within PFR28_01306at 1420.011 kb on - strand, within PFR28_01306at 1420.011 kb on - strand, within PFR28_01306at 1420.011 kb on - strand, within PFR28_01306at 1420.011 kb on - strand, within PFR28_01306at 1420.011 kb on - strand, within PFR28_01306at 1420.011 kb on - strand, within PFR28_01306at 1420.011 kb on - strand, within PFR28_01306at 1420.011 kb on - strand, within PFR28_01306at 1420.011 kb on - strand, within PFR28_01306at 1420.100 kb on - strand, within PFR28_01306at 1420.247 kb on + strandat 1420.310 kb on + strandat 1420.311 kb on - strandat 1420.334 kb on - strandat 1420.334 kb on - strandat 1420.348 kb on + strandat 1420.348 kb on + strandat 1420.348 kb on + strandat 1420.416 kb on + strandat 1420.417 kb on - strandat 1420.417 kb on - strandat 1420.423 kb on - strandat 1420.507 kb on + strand, within PFR28_01307at 1420.507 kb on + strand, within PFR28_01307at 1420.544 kb on + strand, within PFR28_01307at 1420.545 kb on - strand, within PFR28_01307at 1420.731 kb on + strand, within PFR28_01307at 1420.732 kb on - strand, within PFR28_01307at 1420.732 kb on - strand, within PFR28_01307at 1420.732 kb on - strand, within PFR28_01307at 1420.808 kb on + strand, within PFR28_01307at 1421.081 kb on + strand, within PFR28_01307at 1421.081 kb on + strand, within PFR28_01307at 1421.081 kb on + strand, within PFR28_01307at 1421.081 kb on + strand, within PFR28_01307at 1421.081 kb on + strand, within PFR28_01307at 1421.081 kb on + strand, within PFR28_01307at 1421.081 kb on + strand, within PFR28_01307at 1421.081 kb on + strand, within PFR28_01307at 1421.081 kb on + strand, within PFR28_01307at 1421.082 kb on - strand, within PFR28_01307at 1421.082 kb on - strand, within PFR28_01307at 1421.082 kb on - strand, within PFR28_01307at 1421.082 kb on - strand, within PFR28_01307at 1421.082 kb on - strand, within PFR28_01307at 1421.082 kb on - strand, within PFR28_01307at 1421.082 kb on - strand, within PFR28_01307at 1421.082 kb on - strand, within PFR28_01307at 1421.334 kb on + strandat 1421.334 kb on + strandat 1421.334 kb on + strandat 1421.334 kb on + strandat 1421.335 kb on - strandat 1421.335 kb on - strandat 1421.335 kb on - strandat 1421.405 kb on + strandat 1421.405 kb on + strandat 1421.406 kb on - strandat 1421.417 kb on - strandat 1421.461 kb on - strandat 1421.650 kb on + strand, within PFR28_01308at 1421.650 kb on + strand, within PFR28_01308at 1421.650 kb on + strand, within PFR28_01308at 1421.651 kb on - strand, within PFR28_01308at 1421.651 kb on - strand, within PFR28_01308at 1421.651 kb on - strand, within PFR28_01308at 1421.669 kb on + strand, within PFR28_01308at 1421.670 kb on - strand, within PFR28_01308at 1421.670 kb on - strand, within PFR28_01308at 1422.063 kb on + strandat 1422.063 kb on + strandat 1422.063 kb on + strandat 1422.063 kb on + strandat 1422.063 kb on + strandat 1422.064 kb on - strandat 1422.064 kb on - strandat 1422.064 kb on - strandat 1422.176 kb on + strandat 1422.176 kb on + strandat 1422.177 kb on - strandat 1422.177 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C)
remove
1,419,467 + +0.9
1,419,484 + +0.5
1,419,484 + +0.2
1,419,484 + -1.5
1,419,485 - +1.1
1,419,752 + PFR28_01306 0.15 +1.5
1,419,752 + PFR28_01306 0.15 +1.4
1,419,752 + PFR28_01306 0.15 -0.9
1,419,753 - PFR28_01306 0.16 +0.9
1,419,773 + PFR28_01306 0.19 -1.5
1,419,773 + PFR28_01306 0.19 +0.6
1,419,773 + PFR28_01306 0.19 +0.9
1,419,911 + PFR28_01306 0.40 -0.2
1,419,911 + PFR28_01306 0.40 -1.2
1,419,911 + PFR28_01306 0.40 -0.3
1,419,912 - PFR28_01306 0.41 +0.6
1,419,912 - PFR28_01306 0.41 -0.7
1,419,912 - PFR28_01306 0.41 +1.3
1,419,912 - PFR28_01306 0.41 +1.2
1,419,912 - PFR28_01306 0.41 +0.8
1,419,912 - PFR28_01306 0.41 +0.0
1,419,912 - PFR28_01306 0.41 -2.3
1,419,912 - PFR28_01306 0.41 +0.9
1,419,912 - PFR28_01306 0.41 -1.5
1,419,959 + PFR28_01306 0.48 -3.5
1,419,959 + PFR28_01306 0.48 +0.4
1,419,959 + PFR28_01306 0.48 +1.1
1,419,959 + PFR28_01306 0.48 +0.1
1,419,960 - PFR28_01306 0.48 +0.9
1,419,960 - PFR28_01306 0.48 -0.6
1,419,960 - PFR28_01306 0.48 +1.4
1,419,960 - PFR28_01306 0.48 -0.8
1,419,960 - PFR28_01306 0.48 +0.1
1,420,010 + PFR28_01306 0.56 -1.8
1,420,010 + PFR28_01306 0.56 -1.9
1,420,010 + PFR28_01306 0.56 -1.3
1,420,010 + PFR28_01306 0.56 +0.3
1,420,010 + PFR28_01306 0.56 -2.9
1,420,010 + PFR28_01306 0.56 -1.0
1,420,010 + PFR28_01306 0.56 -1.0
1,420,011 - PFR28_01306 0.56 -2.9
1,420,011 - PFR28_01306 0.56 +0.2
1,420,011 - PFR28_01306 0.56 -0.5
1,420,011 - PFR28_01306 0.56 -1.0
1,420,011 - PFR28_01306 0.56 +1.4
1,420,011 - PFR28_01306 0.56 -1.3
1,420,011 - PFR28_01306 0.56 +0.7
1,420,011 - PFR28_01306 0.56 +0.6
1,420,011 - PFR28_01306 0.56 +1.5
1,420,011 - PFR28_01306 0.56 -1.8
1,420,100 - PFR28_01306 0.70 +0.7
1,420,247 + +1.7
1,420,310 + -3.5
1,420,311 - +0.6
1,420,334 - -0.8
1,420,334 - -1.8
1,420,348 + -0.7
1,420,348 + -1.8
1,420,348 + +0.6
1,420,416 + -1.3
1,420,417 - +0.4
1,420,417 - -0.8
1,420,423 - -0.1
1,420,507 + PFR28_01307 0.14 -0.8
1,420,507 + PFR28_01307 0.14 +0.6
1,420,544 + PFR28_01307 0.19 -0.0
1,420,545 - PFR28_01307 0.19 +0.5
1,420,731 + PFR28_01307 0.43 -0.0
1,420,732 - PFR28_01307 0.43 +0.9
1,420,732 - PFR28_01307 0.43 -2.4
1,420,732 - PFR28_01307 0.43 -1.0
1,420,808 + PFR28_01307 0.53 +0.7
1,421,081 + PFR28_01307 0.87 +0.6
1,421,081 + PFR28_01307 0.87 -0.0
1,421,081 + PFR28_01307 0.87 +0.2
1,421,081 + PFR28_01307 0.87 +0.1
1,421,081 + PFR28_01307 0.87 -1.4
1,421,081 + PFR28_01307 0.87 +0.7
1,421,081 + PFR28_01307 0.87 -3.0
1,421,081 + PFR28_01307 0.87 -0.6
1,421,081 + PFR28_01307 0.87 -0.7
1,421,082 - PFR28_01307 0.88 +0.7
1,421,082 - PFR28_01307 0.88 +1.3
1,421,082 - PFR28_01307 0.88 -1.3
1,421,082 - PFR28_01307 0.88 -0.8
1,421,082 - PFR28_01307 0.88 +0.4
1,421,082 - PFR28_01307 0.88 +2.9
1,421,082 - PFR28_01307 0.88 -0.6
1,421,082 - PFR28_01307 0.88 -3.1
1,421,334 + -2.5
1,421,334 + +0.1
1,421,334 + -0.3
1,421,334 + -0.6
1,421,335 - +0.4
1,421,335 - -0.5
1,421,335 - +0.2
1,421,405 + +0.6
1,421,405 + -1.6
1,421,406 - -1.1
1,421,417 - -2.8
1,421,461 - +0.3
1,421,650 + PFR28_01308 0.40 +2.4
1,421,650 + PFR28_01308 0.40 -0.5
1,421,650 + PFR28_01308 0.40 +0.7
1,421,651 - PFR28_01308 0.40 +0.3
1,421,651 - PFR28_01308 0.40 +0.4
1,421,651 - PFR28_01308 0.40 -2.6
1,421,669 + PFR28_01308 0.44 +1.3
1,421,670 - PFR28_01308 0.44 -0.9
1,421,670 - PFR28_01308 0.44 +1.5
1,422,063 + -0.1
1,422,063 + +0.7
1,422,063 + -0.5
1,422,063 + +1.1
1,422,063 + +0.2
1,422,064 - +0.8
1,422,064 - -2.9
1,422,064 - -3.3
1,422,176 + +2.3
1,422,176 + +0.0
1,422,177 - +1.5
1,422,177 - -2.8

Or see this region's nucleotide sequence