Strain Fitness in Pseudomonas sp. RS175 around PFR28_00718

Experiment: sn-glycero-3-phosphocholine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00717 and PFR28_00718 are separated by 127 nucleotidesPFR28_00718 and PFR28_00719 are separated by 77 nucleotidesPFR28_00719 and PFR28_00720 are separated by 214 nucleotides PFR28_00717: PFR28_00717 - hypothetical protein, at 757,134 to 758,363 _00717 PFR28_00718: PFR28_00718 - hypothetical protein, at 758,491 to 758,868 _00718 PFR28_00719: PFR28_00719 - hypothetical protein, at 758,946 to 759,416 _00719 PFR28_00720: PFR28_00720 - hypothetical protein, at 759,631 to 760,005 _00720 Position (kb) 758 759Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 757.625 kb on + strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.626 kb on - strand, within PFR28_00717at 757.626 kb on - strand, within PFR28_00717at 757.626 kb on - strand, within PFR28_00717at 757.626 kb on - strand, within PFR28_00717at 757.684 kb on + strand, within PFR28_00717at 757.684 kb on + strand, within PFR28_00717at 757.684 kb on + strand, within PFR28_00717at 757.685 kb on - strand, within PFR28_00717at 757.685 kb on - strand, within PFR28_00717at 757.908 kb on + strand, within PFR28_00717at 757.908 kb on + strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 758.038 kb on - strand, within PFR28_00717at 758.038 kb on - strand, within PFR28_00717at 758.038 kb on - strand, within PFR28_00717at 758.040 kb on + strand, within PFR28_00717at 758.041 kb on - strand, within PFR28_00717at 758.041 kb on - strand, within PFR28_00717at 758.111 kb on - strand, within PFR28_00717at 758.315 kb on + strandat 758.316 kb on - strandat 758.316 kb on - strandat 758.345 kb on + strandat 758.346 kb on - strandat 758.800 kb on + strand, within PFR28_00718at 758.800 kb on + strand, within PFR28_00718at 758.800 kb on + strand, within PFR28_00718at 758.800 kb on + strand, within PFR28_00718at 758.800 kb on + strand, within PFR28_00718at 758.801 kb on - strand, within PFR28_00718at 758.801 kb on - strand, within PFR28_00718at 758.801 kb on - strand, within PFR28_00718at 758.895 kb on - strandat 758.999 kb on - strand, within PFR28_00719at 758.999 kb on - strand, within PFR28_00719at 758.999 kb on - strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.142 kb on + strand, within PFR28_00719at 759.142 kb on + strand, within PFR28_00719at 759.247 kb on + strand, within PFR28_00719at 759.247 kb on + strand, within PFR28_00719at 759.248 kb on - strand, within PFR28_00719at 759.248 kb on - strand, within PFR28_00719at 759.292 kb on + strand, within PFR28_00719at 759.292 kb on + strand, within PFR28_00719at 759.307 kb on + strand, within PFR28_00719at 759.307 kb on + strand, within PFR28_00719at 759.307 kb on + strand, within PFR28_00719at 759.307 kb on + strand, within PFR28_00719at 759.308 kb on - strand, within PFR28_00719at 759.308 kb on - strand, within PFR28_00719at 759.308 kb on - strand, within PFR28_00719at 759.308 kb on - strand, within PFR28_00719at 759.400 kb on + strandat 759.434 kb on + strandat 759.434 kb on + strandat 759.435 kb on - strandat 759.435 kb on - strandat 759.447 kb on + strandat 759.449 kb on + strandat 759.450 kb on - strandat 759.503 kb on + strandat 759.539 kb on - strandat 759.725 kb on + strand, within PFR28_00720at 759.725 kb on + strand, within PFR28_00720at 759.725 kb on + strand, within PFR28_00720at 759.726 kb on - strand, within PFR28_00720at 759.767 kb on + strand, within PFR28_00720at 759.767 kb on + strand, within PFR28_00720at 759.767 kb on + strand, within PFR28_00720at 759.768 kb on - strand, within PFR28_00720at 759.768 kb on - strand, within PFR28_00720at 759.768 kb on - strand, within PFR28_00720at 759.768 kb on - strand, within PFR28_00720at 759.768 kb on - strand, within PFR28_00720at 759.768 kb on - strand, within PFR28_00720

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Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C)
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757,625 + PFR28_00717 0.40 -0.9
757,625 + PFR28_00717 0.40 -1.2
757,625 + PFR28_00717 0.40 -0.2
757,625 + PFR28_00717 0.40 -0.4
757,625 + PFR28_00717 0.40 +0.0
757,626 - PFR28_00717 0.40 +2.0
757,626 - PFR28_00717 0.40 -1.2
757,626 - PFR28_00717 0.40 +0.6
757,626 - PFR28_00717 0.40 -1.0
757,684 + PFR28_00717 0.45 -0.5
757,684 + PFR28_00717 0.45 +0.6
757,684 + PFR28_00717 0.45 -1.3
757,685 - PFR28_00717 0.45 -2.5
757,685 - PFR28_00717 0.45 -0.3
757,908 + PFR28_00717 0.63 -0.7
757,908 + PFR28_00717 0.63 -1.8
757,909 - PFR28_00717 0.63 -0.2
757,909 - PFR28_00717 0.63 +1.4
757,909 - PFR28_00717 0.63 +0.5
757,909 - PFR28_00717 0.63 +0.6
757,909 - PFR28_00717 0.63 -0.8
757,909 - PFR28_00717 0.63 +1.1
757,909 - PFR28_00717 0.63 +0.3
758,038 - PFR28_00717 0.73 -1.4
758,038 - PFR28_00717 0.73 -0.4
758,038 - PFR28_00717 0.73 -1.3
758,040 + PFR28_00717 0.74 +0.3
758,041 - PFR28_00717 0.74 +0.5
758,041 - PFR28_00717 0.74 -0.5
758,111 - PFR28_00717 0.79 +0.4
758,315 + +1.0
758,316 - -1.6
758,316 - -0.8
758,345 + +0.9
758,346 - +0.3
758,800 + PFR28_00718 0.82 -0.0
758,800 + PFR28_00718 0.82 +0.9
758,800 + PFR28_00718 0.82 +0.2
758,800 + PFR28_00718 0.82 -1.7
758,800 + PFR28_00718 0.82 +0.3
758,801 - PFR28_00718 0.82 -1.1
758,801 - PFR28_00718 0.82 +0.8
758,801 - PFR28_00718 0.82 -0.8
758,895 - +0.6
758,999 - PFR28_00719 0.11 +0.3
758,999 - PFR28_00719 0.11 -0.1
758,999 - PFR28_00719 0.11 +0.7
759,052 + PFR28_00719 0.23 +0.6
759,052 + PFR28_00719 0.23 -0.2
759,052 + PFR28_00719 0.23 +1.6
759,052 + PFR28_00719 0.23 -0.3
759,052 + PFR28_00719 0.23 -1.4
759,052 + PFR28_00719 0.23 -1.0
759,052 + PFR28_00719 0.23 +0.6
759,052 + PFR28_00719 0.23 +0.9
759,052 + PFR28_00719 0.23 -1.8
759,052 + PFR28_00719 0.23 +1.0
759,052 + PFR28_00719 0.23 -1.7
759,052 + PFR28_00719 0.23 +0.6
759,052 + PFR28_00719 0.23 -3.2
759,053 - PFR28_00719 0.23 -1.4
759,053 - PFR28_00719 0.23 +0.9
759,053 - PFR28_00719 0.23 -2.0
759,053 - PFR28_00719 0.23 -0.7
759,053 - PFR28_00719 0.23 +0.6
759,053 - PFR28_00719 0.23 -1.5
759,053 - PFR28_00719 0.23 +0.7
759,053 - PFR28_00719 0.23 -0.5
759,053 - PFR28_00719 0.23 +2.3
759,118 + PFR28_00719 0.37 +1.1
759,118 + PFR28_00719 0.37 -0.7
759,118 + PFR28_00719 0.37 +2.6
759,118 + PFR28_00719 0.37 +1.4
759,118 + PFR28_00719 0.37 +0.6
759,118 + PFR28_00719 0.37 -0.3
759,118 + PFR28_00719 0.37 +1.1
759,118 + PFR28_00719 0.37 +1.2
759,118 + PFR28_00719 0.37 -0.7
759,118 + PFR28_00719 0.37 +2.2
759,118 + PFR28_00719 0.37 +0.2
759,118 + PFR28_00719 0.37 -1.7
759,119 - PFR28_00719 0.37 -2.3
759,119 - PFR28_00719 0.37 +0.2
759,119 - PFR28_00719 0.37 -1.8
759,119 - PFR28_00719 0.37 -2.7
759,119 - PFR28_00719 0.37 +0.4
759,119 - PFR28_00719 0.37 +1.7
759,119 - PFR28_00719 0.37 -0.6
759,119 - PFR28_00719 0.37 -0.8
759,142 + PFR28_00719 0.42 -0.1
759,142 + PFR28_00719 0.42 +0.3
759,247 + PFR28_00719 0.64 -2.7
759,247 + PFR28_00719 0.64 -1.3
759,248 - PFR28_00719 0.64 -2.5
759,248 - PFR28_00719 0.64 -2.0
759,292 + PFR28_00719 0.73 +0.6
759,292 + PFR28_00719 0.73 -0.6
759,307 + PFR28_00719 0.77 -0.8
759,307 + PFR28_00719 0.77 -2.8
759,307 + PFR28_00719 0.77 +0.3
759,307 + PFR28_00719 0.77 -0.5
759,308 - PFR28_00719 0.77 -1.7
759,308 - PFR28_00719 0.77 -2.1
759,308 - PFR28_00719 0.77 -0.1
759,308 - PFR28_00719 0.77 -0.2
759,400 + -1.5
759,434 + +1.3
759,434 + -0.5
759,435 - +0.3
759,435 - +0.4
759,447 + -0.1
759,449 + +0.4
759,450 - +0.4
759,503 + +0.7
759,539 - +0.4
759,725 + PFR28_00720 0.25 +1.8
759,725 + PFR28_00720 0.25 -2.7
759,725 + PFR28_00720 0.25 -0.6
759,726 - PFR28_00720 0.25 -0.4
759,767 + PFR28_00720 0.36 -0.7
759,767 + PFR28_00720 0.36 +0.1
759,767 + PFR28_00720 0.36 -0.5
759,768 - PFR28_00720 0.37 -0.0
759,768 - PFR28_00720 0.37 +1.3
759,768 - PFR28_00720 0.37 -2.5
759,768 - PFR28_00720 0.37 -0.1
759,768 - PFR28_00720 0.37 -1.4
759,768 - PFR28_00720 0.37 -1.2

Or see this region's nucleotide sequence