Strain Fitness in Pseudomonas sp. RS175 around PFR28_00716

Experiment: sn-glycero-3-phosphocholine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00714 and PFR28_00715 are separated by 50 nucleotidesPFR28_00715 and PFR28_00716 are separated by 159 nucleotidesPFR28_00716 and PFR28_00717 are separated by 32 nucleotides PFR28_00714: PFR28_00714 - Glyoxylate/hydroxypyruvate reductase A, at 754,916 to 755,848 _00714 PFR28_00715: PFR28_00715 - malonic semialdehyde reductase RutE, at 755,899 to 756,492 _00715 PFR28_00716: PFR28_00716 - hypothetical protein, at 756,652 to 757,101 _00716 PFR28_00717: PFR28_00717 - hypothetical protein, at 757,134 to 758,363 _00717 Position (kb) 756 757 758Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 755.796 kb on - strandat 755.900 kb on + strandat 755.901 kb on - strandat 755.901 kb on - strandat 755.901 kb on - strandat 755.976 kb on - strand, within PFR28_00715at 755.976 kb on - strand, within PFR28_00715at 756.036 kb on - strand, within PFR28_00715at 756.036 kb on - strand, within PFR28_00715at 756.099 kb on + strand, within PFR28_00715at 756.320 kb on + strand, within PFR28_00715at 756.347 kb on + strand, within PFR28_00715at 756.347 kb on + strand, within PFR28_00715at 756.348 kb on - strand, within PFR28_00715at 756.534 kb on + strandat 756.534 kb on + strandat 756.534 kb on + strandat 756.534 kb on + strandat 756.534 kb on + strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.609 kb on + strandat 756.609 kb on + strandat 756.609 kb on + strandat 756.610 kb on - strandat 756.680 kb on + strandat 756.787 kb on + strand, within PFR28_00716at 756.787 kb on + strand, within PFR28_00716at 756.787 kb on + strand, within PFR28_00716at 756.787 kb on + strand, within PFR28_00716at 756.788 kb on - strand, within PFR28_00716at 756.788 kb on - strand, within PFR28_00716at 756.790 kb on + strand, within PFR28_00716at 756.790 kb on + strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 757.085 kb on + strandat 757.086 kb on - strandat 757.221 kb on + strandat 757.221 kb on + strandat 757.222 kb on - strandat 757.330 kb on - strand, within PFR28_00717at 757.426 kb on - strand, within PFR28_00717at 757.426 kb on - strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.626 kb on - strand, within PFR28_00717at 757.626 kb on - strand, within PFR28_00717at 757.626 kb on - strand, within PFR28_00717at 757.626 kb on - strand, within PFR28_00717at 757.684 kb on + strand, within PFR28_00717at 757.684 kb on + strand, within PFR28_00717at 757.684 kb on + strand, within PFR28_00717at 757.685 kb on - strand, within PFR28_00717at 757.685 kb on - strand, within PFR28_00717at 757.908 kb on + strand, within PFR28_00717at 757.908 kb on + strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 758.038 kb on - strand, within PFR28_00717at 758.038 kb on - strand, within PFR28_00717at 758.038 kb on - strand, within PFR28_00717at 758.040 kb on + strand, within PFR28_00717at 758.041 kb on - strand, within PFR28_00717at 758.041 kb on - strand, within PFR28_00717

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Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C)
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755,796 - +0.4
755,900 + -0.3
755,901 - +0.8
755,901 - +1.8
755,901 - +0.1
755,976 - PFR28_00715 0.13 -0.7
755,976 - PFR28_00715 0.13 -1.0
756,036 - PFR28_00715 0.23 -0.5
756,036 - PFR28_00715 0.23 -0.8
756,099 + PFR28_00715 0.34 -0.5
756,320 + PFR28_00715 0.71 -1.8
756,347 + PFR28_00715 0.75 +0.5
756,347 + PFR28_00715 0.75 -1.1
756,348 - PFR28_00715 0.76 -0.3
756,534 + +0.3
756,534 + +0.3
756,534 + +1.3
756,534 + -1.0
756,534 + -0.9
756,535 - +0.3
756,535 - +0.6
756,535 - -0.2
756,535 - +0.4
756,535 - +1.3
756,535 - +1.0
756,535 - +0.1
756,535 - -0.6
756,535 - +2.0
756,535 - -0.2
756,609 + -0.7
756,609 + +0.4
756,609 + +0.4
756,610 - +0.1
756,680 + -1.4
756,787 + PFR28_00716 0.30 +0.7
756,787 + PFR28_00716 0.30 -0.1
756,787 + PFR28_00716 0.30 -0.2
756,787 + PFR28_00716 0.30 -0.1
756,788 - PFR28_00716 0.30 +0.2
756,788 - PFR28_00716 0.30 +0.4
756,790 + PFR28_00716 0.31 +0.5
756,790 + PFR28_00716 0.31 -1.8
756,791 - PFR28_00716 0.31 -0.1
756,791 - PFR28_00716 0.31 -0.9
756,791 - PFR28_00716 0.31 -0.5
756,791 - PFR28_00716 0.31 -1.0
756,791 - PFR28_00716 0.31 -0.8
757,085 + -0.5
757,086 - -0.3
757,221 + -2.4
757,221 + +1.3
757,222 - -0.2
757,330 - PFR28_00717 0.16 -2.8
757,426 - PFR28_00717 0.24 -1.4
757,426 - PFR28_00717 0.24 -0.2
757,625 + PFR28_00717 0.40 -0.9
757,625 + PFR28_00717 0.40 -1.2
757,625 + PFR28_00717 0.40 -0.2
757,625 + PFR28_00717 0.40 -0.4
757,625 + PFR28_00717 0.40 +0.0
757,626 - PFR28_00717 0.40 +2.0
757,626 - PFR28_00717 0.40 -1.2
757,626 - PFR28_00717 0.40 +0.6
757,626 - PFR28_00717 0.40 -1.0
757,684 + PFR28_00717 0.45 -0.5
757,684 + PFR28_00717 0.45 +0.6
757,684 + PFR28_00717 0.45 -1.3
757,685 - PFR28_00717 0.45 -2.5
757,685 - PFR28_00717 0.45 -0.3
757,908 + PFR28_00717 0.63 -0.7
757,908 + PFR28_00717 0.63 -1.8
757,909 - PFR28_00717 0.63 -0.2
757,909 - PFR28_00717 0.63 +1.4
757,909 - PFR28_00717 0.63 +0.5
757,909 - PFR28_00717 0.63 +0.6
757,909 - PFR28_00717 0.63 -0.8
757,909 - PFR28_00717 0.63 +1.1
757,909 - PFR28_00717 0.63 +0.3
758,038 - PFR28_00717 0.73 -1.4
758,038 - PFR28_00717 0.73 -0.4
758,038 - PFR28_00717 0.73 -1.3
758,040 + PFR28_00717 0.74 +0.3
758,041 - PFR28_00717 0.74 +0.5
758,041 - PFR28_00717 0.74 -0.5

Or see this region's nucleotide sequence