Strain Fitness in Pseudomonas sp. RS175 around PFR28_00076

Experiment: sn-glycero-3-phosphocholine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00075 and PFR28_00076 are separated by 256 nucleotidesPFR28_00076 and PFR28_00077 are separated by 27 nucleotides PFR28_00075: PFR28_00075 - 4-hydroxy-tetrahydrodipicolinate reductase, at 85,675 to 86,481 _00075 PFR28_00076: PFR28_00076 - Carbamoyl-phosphate synthase small chain, at 86,738 to 87,874 _00076 PFR28_00077: PFR28_00077 - Carbamoyl-phosphate synthase large chain, at 87,902 to 91,201 _00077 Position (kb) 86 87 88Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 86.605 kb on + strandat 86.650 kb on + strandat 86.674 kb on + strandat 86.674 kb on + strandat 86.674 kb on + strandat 86.674 kb on + strandat 86.674 kb on + strandat 86.674 kb on + strandat 86.692 kb on + strandat 86.692 kb on + strandat 86.724 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C)
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86,605 + +0.7
86,650 + -0.8
86,674 + +1.9
86,674 + -2.9
86,674 + +2.1
86,674 + -0.0
86,674 + -2.0
86,674 + +0.7
86,692 + +0.9
86,692 + -1.0
86,724 + +1.8

Or see this region's nucleotide sequence