Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18085

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18075 and ABIE41_RS18080 are separated by 26 nucleotidesABIE41_RS18080 and ABIE41_RS18085 are separated by 15 nucleotidesABIE41_RS18085 and ABIE41_RS18090 are separated by 6 nucleotides ABIE41_RS18075: ABIE41_RS18075 - multicopper oxidase family protein, at 3,724,185 to 3,725,621 _RS18075 ABIE41_RS18080: ABIE41_RS18080 - DoxX family protein, at 3,725,648 to 3,726,022 _RS18080 ABIE41_RS18085: ABIE41_RS18085 - gluconokinase, at 3,726,038 to 3,726,565 _RS18085 ABIE41_RS18090: ABIE41_RS18090 - phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating), at 3,726,572 to 3,727,558 _RS18090 Position (kb) 3726 3727Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3725.369 kb on + strand, within ABIE41_RS18075at 3725.478 kb on + strandat 3725.479 kb on - strandat 3725.479 kb on - strandat 3725.672 kb on + strandat 3725.760 kb on + strand, within ABIE41_RS18080at 3725.761 kb on - strand, within ABIE41_RS18080at 3725.761 kb on - strand, within ABIE41_RS18080at 3725.761 kb on - strand, within ABIE41_RS18080at 3725.849 kb on + strand, within ABIE41_RS18080at 3725.849 kb on + strand, within ABIE41_RS18080at 3725.931 kb on - strand, within ABIE41_RS18080at 3725.931 kb on - strand, within ABIE41_RS18080at 3726.235 kb on - strand, within ABIE41_RS18085at 3726.235 kb on - strand, within ABIE41_RS18085at 3726.318 kb on + strand, within ABIE41_RS18085at 3726.772 kb on - strand, within ABIE41_RS18090at 3726.891 kb on + strand, within ABIE41_RS18090at 3726.970 kb on - strand, within ABIE41_RS18090at 3727.032 kb on + strand, within ABIE41_RS18090at 3727.032 kb on + strand, within ABIE41_RS18090at 3727.033 kb on - strand, within ABIE41_RS18090at 3727.215 kb on + strand, within ABIE41_RS18090at 3727.216 kb on - strand, within ABIE41_RS18090at 3727.216 kb on - strand, within ABIE41_RS18090at 3727.216 kb on - strand, within ABIE41_RS18090at 3727.216 kb on - strand, within ABIE41_RS18090

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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3,725,369 + ABIE41_RS18075 0.82 -0.8
3,725,478 + +2.1
3,725,479 - +0.2
3,725,479 - +0.5
3,725,672 + +0.6
3,725,760 + ABIE41_RS18080 0.30 +2.1
3,725,761 - ABIE41_RS18080 0.30 +0.6
3,725,761 - ABIE41_RS18080 0.30 +0.8
3,725,761 - ABIE41_RS18080 0.30 +0.4
3,725,849 + ABIE41_RS18080 0.54 +0.7
3,725,849 + ABIE41_RS18080 0.54 +0.2
3,725,931 - ABIE41_RS18080 0.75 +0.1
3,725,931 - ABIE41_RS18080 0.75 -0.2
3,726,235 - ABIE41_RS18085 0.37 +0.1
3,726,235 - ABIE41_RS18085 0.37 -1.8
3,726,318 + ABIE41_RS18085 0.53 +1.2
3,726,772 - ABIE41_RS18090 0.20 -0.1
3,726,891 + ABIE41_RS18090 0.32 +0.7
3,726,970 - ABIE41_RS18090 0.40 -0.5
3,727,032 + ABIE41_RS18090 0.47 +0.4
3,727,032 + ABIE41_RS18090 0.47 -0.1
3,727,033 - ABIE41_RS18090 0.47 +0.1
3,727,215 + ABIE41_RS18090 0.65 +1.1
3,727,216 - ABIE41_RS18090 0.65 +0.2
3,727,216 - ABIE41_RS18090 0.65 +1.2
3,727,216 - ABIE41_RS18090 0.65 -2.0
3,727,216 - ABIE41_RS18090 0.65 +3.1

Or see this region's nucleotide sequence