Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS10060 and ABIE41_RS10065 are separated by 12 nucleotides ABIE41_RS10065 and ABIE41_RS10070 are separated by 167 nucleotides ABIE41_RS10070 and ABIE41_RS10075 overlap by 4 nucleotides ABIE41_RS10075 and ABIE41_RS10080 overlap by 4 nucleotides ABIE41_RS10080 and ABIE41_RS10085 are separated by 125 nucleotides
ABIE41_RS10060: ABIE41_RS10060 - hydroxymethylbilane synthase, at 2,077,271 to 2,078,215
_RS10060
ABIE41_RS10065: ABIE41_RS10065 - TspO/MBR family protein, at 2,078,228 to 2,078,707
_RS10065
ABIE41_RS10070: ABIE41_RS10070 - sulfite-sensing transcriptional repressor BigR, at 2,078,875 to 2,079,165
_RS10070
ABIE41_RS10075: ABIE41_RS10075 - YeeE/YedE family protein, at 2,079,162 to 2,079,569
_RS10075
ABIE41_RS10080: ABIE41_RS10080 - YeeE/YedE family protein, at 2,079,566 to 2,080,006
_RS10080
ABIE41_RS10085: ABIE41_RS10085 - hypothetical protein, at 2,080,132 to 2,080,275
_RS10085
Position (kb)
2078
2079
2080 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2078.466 kb on + strand, within ABIE41_RS10065 at 2078.466 kb on + strand, within ABIE41_RS10065 at 2078.467 kb on - strand, within ABIE41_RS10065 at 2078.467 kb on - strand, within ABIE41_RS10065 at 2078.467 kb on - strand, within ABIE41_RS10065 at 2078.467 kb on - strand, within ABIE41_RS10065 at 2078.544 kb on + strand, within ABIE41_RS10065 at 2078.544 kb on + strand, within ABIE41_RS10065 at 2078.544 kb on + strand, within ABIE41_RS10065 at 2078.544 kb on + strand, within ABIE41_RS10065 at 2078.544 kb on + strand, within ABIE41_RS10065 at 2078.544 kb on + strand, within ABIE41_RS10065 at 2078.545 kb on - strand, within ABIE41_RS10065 at 2078.545 kb on - strand, within ABIE41_RS10065 at 2078.545 kb on - strand, within ABIE41_RS10065 at 2078.614 kb on - strand, within ABIE41_RS10065 at 2078.715 kb on - strand at 2078.715 kb on - strand at 2078.818 kb on + strand at 2079.133 kb on + strand, within ABIE41_RS10070 at 2079.134 kb on - strand, within ABIE41_RS10070 at 2079.134 kb on - strand, within ABIE41_RS10070 at 2079.175 kb on - strand at 2079.720 kb on + strand, within ABIE41_RS10080 at 2079.721 kb on - strand, within ABIE41_RS10080
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM remove 2,078,466 + ABIE41_RS10065 0.50 +0.1 2,078,466 + ABIE41_RS10065 0.50 +1.3 2,078,467 - ABIE41_RS10065 0.50 +0.7 2,078,467 - ABIE41_RS10065 0.50 +1.9 2,078,467 - ABIE41_RS10065 0.50 +0.9 2,078,467 - ABIE41_RS10065 0.50 +3.3 2,078,544 + ABIE41_RS10065 0.66 -0.6 2,078,544 + ABIE41_RS10065 0.66 +0.2 2,078,544 + ABIE41_RS10065 0.66 -1.0 2,078,544 + ABIE41_RS10065 0.66 -0.5 2,078,544 + ABIE41_RS10065 0.66 -0.3 2,078,544 + ABIE41_RS10065 0.66 -0.1 2,078,545 - ABIE41_RS10065 0.66 +0.1 2,078,545 - ABIE41_RS10065 0.66 +0.6 2,078,545 - ABIE41_RS10065 0.66 -0.6 2,078,614 - ABIE41_RS10065 0.80 +0.2 2,078,715 - -0.7 2,078,715 - -0.6 2,078,818 + +0.1 2,079,133 + ABIE41_RS10070 0.89 -0.5 2,079,134 - ABIE41_RS10070 0.89 +1.5 2,079,134 - ABIE41_RS10070 0.89 +0.4 2,079,175 - -0.7 2,079,720 + ABIE41_RS10080 0.35 +0.5 2,079,721 - ABIE41_RS10080 0.35 -1.2
Or see this region's nucleotide sequence