Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06115

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06105 and ABIE41_RS06110 overlap by 4 nucleotidesABIE41_RS06110 and ABIE41_RS06115 are separated by 69 nucleotidesABIE41_RS06115 and ABIE41_RS06120 are separated by 37 nucleotidesABIE41_RS06120 and ABIE41_RS06125 are separated by 126 nucleotidesABIE41_RS06125 and ABIE41_RS06130 are separated by 119 nucleotidesABIE41_RS06130 and ABIE41_RS06135 are separated by 77 nucleotides ABIE41_RS06105: ABIE41_RS06105 - HutD family protein, at 1,259,392 to 1,259,982 _RS06105 ABIE41_RS06110: ABIE41_RS06110 - carbonic anhydrase, at 1,259,979 to 1,260,671 _RS06110 ABIE41_RS06115: ABIE41_RS06115 - DUF167 family protein, at 1,260,741 to 1,261,052 _RS06115 ABIE41_RS06120: ABIE41_RS06120 - YggT family protein, at 1,261,090 to 1,261,380 _RS06120 ABIE41_RS06125: ABIE41_RS06125 - tRNA-Ala, at 1,261,507 to 1,261,582 _RS06125 ABIE41_RS06130: ABIE41_RS06130 - hypothetical protein, at 1,261,702 to 1,261,911 _RS06130 ABIE41_RS06135: ABIE41_RS06135 - DUF882 domain-containing protein, at 1,261,989 to 1,263,797 _RS06135 Position (kb) 1260 1261 1262Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1259.779 kb on - strand, within ABIE41_RS06105at 1259.779 kb on - strand, within ABIE41_RS06105at 1259.833 kb on + strand, within ABIE41_RS06105at 1260.088 kb on + strand, within ABIE41_RS06110at 1260.199 kb on + strand, within ABIE41_RS06110at 1260.199 kb on + strand, within ABIE41_RS06110at 1260.199 kb on + strand, within ABIE41_RS06110at 1260.200 kb on - strand, within ABIE41_RS06110at 1260.200 kb on - strand, within ABIE41_RS06110at 1260.361 kb on + strand, within ABIE41_RS06110at 1260.362 kb on + strand, within ABIE41_RS06110at 1260.362 kb on + strand, within ABIE41_RS06110at 1260.362 kb on + strand, within ABIE41_RS06110at 1260.363 kb on - strand, within ABIE41_RS06110at 1260.363 kb on - strand, within ABIE41_RS06110at 1260.363 kb on - strand, within ABIE41_RS06110at 1260.363 kb on - strand, within ABIE41_RS06110at 1260.363 kb on - strand, within ABIE41_RS06110at 1260.363 kb on - strand, within ABIE41_RS06110at 1260.363 kb on - strand, within ABIE41_RS06110at 1260.363 kb on - strand, within ABIE41_RS06110at 1260.363 kb on - strand, within ABIE41_RS06110at 1260.391 kb on + strand, within ABIE41_RS06110at 1260.391 kb on + strand, within ABIE41_RS06110at 1260.391 kb on + strand, within ABIE41_RS06110at 1260.392 kb on - strand, within ABIE41_RS06110at 1260.447 kb on + strand, within ABIE41_RS06110at 1260.447 kb on + strand, within ABIE41_RS06110at 1260.447 kb on + strand, within ABIE41_RS06110at 1260.447 kb on + strand, within ABIE41_RS06110at 1260.448 kb on - strand, within ABIE41_RS06110at 1260.448 kb on - strand, within ABIE41_RS06110at 1260.448 kb on - strand, within ABIE41_RS06110at 1260.448 kb on - strand, within ABIE41_RS06110at 1260.448 kb on - strand, within ABIE41_RS06110at 1260.448 kb on - strand, within ABIE41_RS06110at 1260.448 kb on - strand, within ABIE41_RS06110at 1260.580 kb on + strand, within ABIE41_RS06110at 1260.581 kb on - strand, within ABIE41_RS06110at 1260.951 kb on - strand, within ABIE41_RS06115at 1261.106 kb on + strandat 1261.107 kb on - strandat 1261.112 kb on + strandat 1261.112 kb on + strandat 1261.112 kb on + strandat 1261.113 kb on - strandat 1261.113 kb on - strandat 1261.113 kb on - strandat 1261.113 kb on - strandat 1261.113 kb on - strandat 1261.337 kb on + strand, within ABIE41_RS06120at 1261.337 kb on + strand, within ABIE41_RS06120at 1261.337 kb on + strand, within ABIE41_RS06120at 1261.338 kb on - strand, within ABIE41_RS06120at 1261.338 kb on - strand, within ABIE41_RS06120at 1261.515 kb on - strand, within ABIE41_RS06125at 1261.727 kb on + strand, within ABIE41_RS06130at 1261.727 kb on + strand, within ABIE41_RS06130at 1261.727 kb on + strand, within ABIE41_RS06130at 1261.727 kb on + strand, within ABIE41_RS06130at 1261.728 kb on - strand, within ABIE41_RS06130at 1261.728 kb on - strand, within ABIE41_RS06130

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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1,259,779 - ABIE41_RS06105 0.65 +0.9
1,259,779 - ABIE41_RS06105 0.65 +0.4
1,259,833 + ABIE41_RS06105 0.75 +0.7
1,260,088 + ABIE41_RS06110 0.16 -0.5
1,260,199 + ABIE41_RS06110 0.32 +0.1
1,260,199 + ABIE41_RS06110 0.32 -0.1
1,260,199 + ABIE41_RS06110 0.32 -0.4
1,260,200 - ABIE41_RS06110 0.32 +0.0
1,260,200 - ABIE41_RS06110 0.32 -0.4
1,260,361 + ABIE41_RS06110 0.55 -0.4
1,260,362 + ABIE41_RS06110 0.55 -0.7
1,260,362 + ABIE41_RS06110 0.55 -1.1
1,260,362 + ABIE41_RS06110 0.55 -0.3
1,260,363 - ABIE41_RS06110 0.55 +0.1
1,260,363 - ABIE41_RS06110 0.55 -0.8
1,260,363 - ABIE41_RS06110 0.55 +0.4
1,260,363 - ABIE41_RS06110 0.55 +0.2
1,260,363 - ABIE41_RS06110 0.55 -0.5
1,260,363 - ABIE41_RS06110 0.55 -0.6
1,260,363 - ABIE41_RS06110 0.55 -0.1
1,260,363 - ABIE41_RS06110 0.55 -0.5
1,260,363 - ABIE41_RS06110 0.55 -0.3
1,260,391 + ABIE41_RS06110 0.59 +0.1
1,260,391 + ABIE41_RS06110 0.59 -0.0
1,260,391 + ABIE41_RS06110 0.59 -1.0
1,260,392 - ABIE41_RS06110 0.60 -0.2
1,260,447 + ABIE41_RS06110 0.68 -1.4
1,260,447 + ABIE41_RS06110 0.68 -0.1
1,260,447 + ABIE41_RS06110 0.68 +1.0
1,260,447 + ABIE41_RS06110 0.68 -0.2
1,260,448 - ABIE41_RS06110 0.68 -0.1
1,260,448 - ABIE41_RS06110 0.68 +0.6
1,260,448 - ABIE41_RS06110 0.68 -0.2
1,260,448 - ABIE41_RS06110 0.68 -0.6
1,260,448 - ABIE41_RS06110 0.68 +0.0
1,260,448 - ABIE41_RS06110 0.68 -1.1
1,260,448 - ABIE41_RS06110 0.68 +1.6
1,260,580 + ABIE41_RS06110 0.87 -0.2
1,260,581 - ABIE41_RS06110 0.87 -0.8
1,260,951 - ABIE41_RS06115 0.67 -0.9
1,261,106 + -0.1
1,261,107 - +0.7
1,261,112 + +0.0
1,261,112 + -0.9
1,261,112 + -0.4
1,261,113 - +0.5
1,261,113 - +2.6
1,261,113 - +1.9
1,261,113 - +0.1
1,261,113 - -0.5
1,261,337 + ABIE41_RS06120 0.85 -1.3
1,261,337 + ABIE41_RS06120 0.85 -0.4
1,261,337 + ABIE41_RS06120 0.85 -3.9
1,261,338 - ABIE41_RS06120 0.85 -1.1
1,261,338 - ABIE41_RS06120 0.85 -1.8
1,261,515 - ABIE41_RS06125 0.11 -1.1
1,261,727 + ABIE41_RS06130 0.12 -0.6
1,261,727 + ABIE41_RS06130 0.12 -0.3
1,261,727 + ABIE41_RS06130 0.12 -0.4
1,261,727 + ABIE41_RS06130 0.12 -1.2
1,261,728 - ABIE41_RS06130 0.12 -0.4
1,261,728 - ABIE41_RS06130 0.12 -1.7

Or see this region's nucleotide sequence