Strain Fitness in Bosea sp. OAE506 around ABIE41_RS02360

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS02350 and ABIE41_RS02355 are separated by 128 nucleotidesABIE41_RS02355 and ABIE41_RS02360 are separated by 9 nucleotidesABIE41_RS02360 and ABIE41_RS02365 overlap by 4 nucleotidesABIE41_RS02365 and ABIE41_RS02370 overlap by 4 nucleotides ABIE41_RS02350: ABIE41_RS02350 - arginase, at 468,601 to 469,530 _RS02350 ABIE41_RS02355: ABIE41_RS02355 - Lrp/AsnC family transcriptional regulator, at 469,659 to 470,114 _RS02355 ABIE41_RS02360: ABIE41_RS02360 - ABC transporter permease, at 470,124 to 470,939 _RS02360 ABIE41_RS02365: ABIE41_RS02365 - ABC transporter permease, at 470,936 to 471,841 _RS02365 ABIE41_RS02370: ABIE41_RS02370 - ABC transporter ATP-binding protein, at 471,838 to 472,929 _RS02370 Position (kb) 470 471Strain fitness (log2 ratio) -2 -1 0 1 2 3at 469.280 kb on + strand, within ABIE41_RS02350at 469.280 kb on + strand, within ABIE41_RS02350at 469.280 kb on + strand, within ABIE41_RS02350at 469.281 kb on - strand, within ABIE41_RS02350at 469.281 kb on - strand, within ABIE41_RS02350at 469.281 kb on - strand, within ABIE41_RS02350at 469.281 kb on - strand, within ABIE41_RS02350at 469.281 kb on - strand, within ABIE41_RS02350at 469.560 kb on - strandat 469.599 kb on - strandat 469.615 kb on + strandat 469.616 kb on - strandat 469.807 kb on - strand, within ABIE41_RS02355at 470.278 kb on + strand, within ABIE41_RS02360at 470.491 kb on + strand, within ABIE41_RS02360at 470.491 kb on + strand, within ABIE41_RS02360at 470.491 kb on + strand, within ABIE41_RS02360at 470.492 kb on - strand, within ABIE41_RS02360at 470.492 kb on - strand, within ABIE41_RS02360at 470.492 kb on - strand, within ABIE41_RS02360at 470.592 kb on - strand, within ABIE41_RS02360at 470.592 kb on - strand, within ABIE41_RS02360at 470.592 kb on - strand, within ABIE41_RS02360at 470.592 kb on - strand, within ABIE41_RS02360at 470.764 kb on + strand, within ABIE41_RS02360at 470.764 kb on + strand, within ABIE41_RS02360at 470.765 kb on - strand, within ABIE41_RS02360at 470.765 kb on - strand, within ABIE41_RS02360at 470.765 kb on - strand, within ABIE41_RS02360at 470.765 kb on - strand, within ABIE41_RS02360at 470.801 kb on + strand, within ABIE41_RS02360at 470.801 kb on + strand, within ABIE41_RS02360at 470.801 kb on + strand, within ABIE41_RS02360at 470.802 kb on - strand, within ABIE41_RS02360at 470.803 kb on + strand, within ABIE41_RS02360at 470.803 kb on + strand, within ABIE41_RS02360at 470.803 kb on + strand, within ABIE41_RS02360at 470.803 kb on + strand, within ABIE41_RS02360at 470.804 kb on - strand, within ABIE41_RS02360at 471.064 kb on - strand, within ABIE41_RS02365at 471.078 kb on + strand, within ABIE41_RS02365at 471.078 kb on + strand, within ABIE41_RS02365at 471.102 kb on + strand, within ABIE41_RS02365at 471.102 kb on + strand, within ABIE41_RS02365at 471.103 kb on - strand, within ABIE41_RS02365at 471.103 kb on - strand, within ABIE41_RS02365at 471.103 kb on - strand, within ABIE41_RS02365at 471.103 kb on - strand, within ABIE41_RS02365at 471.103 kb on - strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.145 kb on - strand, within ABIE41_RS02365at 471.145 kb on - strand, within ABIE41_RS02365at 471.145 kb on - strand, within ABIE41_RS02365at 471.145 kb on - strand, within ABIE41_RS02365at 471.145 kb on - strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.448 kb on - strand, within ABIE41_RS02365at 471.448 kb on - strand, within ABIE41_RS02365at 471.448 kb on - strand, within ABIE41_RS02365at 471.448 kb on - strand, within ABIE41_RS02365at 471.500 kb on - strand, within ABIE41_RS02365at 471.500 kb on - strand, within ABIE41_RS02365at 471.537 kb on + strand, within ABIE41_RS02365at 471.537 kb on + strand, within ABIE41_RS02365at 471.538 kb on - strand, within ABIE41_RS02365at 471.538 kb on - strand, within ABIE41_RS02365at 471.538 kb on - strand, within ABIE41_RS02365at 471.618 kb on + strand, within ABIE41_RS02365at 471.619 kb on - strand, within ABIE41_RS02365at 471.619 kb on - strand, within ABIE41_RS02365

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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469,280 + ABIE41_RS02350 0.73 +0.3
469,280 + ABIE41_RS02350 0.73 -0.2
469,280 + ABIE41_RS02350 0.73 +1.9
469,281 - ABIE41_RS02350 0.73 +0.1
469,281 - ABIE41_RS02350 0.73 -0.0
469,281 - ABIE41_RS02350 0.73 +0.3
469,281 - ABIE41_RS02350 0.73 +0.5
469,281 - ABIE41_RS02350 0.73 -1.1
469,560 - +0.2
469,599 - +1.1
469,615 + +0.8
469,616 - +0.1
469,807 - ABIE41_RS02355 0.32 -0.2
470,278 + ABIE41_RS02360 0.19 -0.2
470,491 + ABIE41_RS02360 0.45 +0.0
470,491 + ABIE41_RS02360 0.45 -0.5
470,491 + ABIE41_RS02360 0.45 -1.4
470,492 - ABIE41_RS02360 0.45 -0.2
470,492 - ABIE41_RS02360 0.45 -0.9
470,492 - ABIE41_RS02360 0.45 +2.5
470,592 - ABIE41_RS02360 0.57 -0.7
470,592 - ABIE41_RS02360 0.57 -0.5
470,592 - ABIE41_RS02360 0.57 +1.3
470,592 - ABIE41_RS02360 0.57 -0.3
470,764 + ABIE41_RS02360 0.78 +0.0
470,764 + ABIE41_RS02360 0.78 -0.2
470,765 - ABIE41_RS02360 0.79 -2.6
470,765 - ABIE41_RS02360 0.79 +0.4
470,765 - ABIE41_RS02360 0.79 -1.1
470,765 - ABIE41_RS02360 0.79 -2.0
470,801 + ABIE41_RS02360 0.83 +0.3
470,801 + ABIE41_RS02360 0.83 +0.2
470,801 + ABIE41_RS02360 0.83 -0.2
470,802 - ABIE41_RS02360 0.83 +0.2
470,803 + ABIE41_RS02360 0.83 +1.6
470,803 + ABIE41_RS02360 0.83 +1.1
470,803 + ABIE41_RS02360 0.83 -0.3
470,803 + ABIE41_RS02360 0.83 +0.3
470,804 - ABIE41_RS02360 0.83 +0.6
471,064 - ABIE41_RS02365 0.14 +0.8
471,078 + ABIE41_RS02365 0.16 +0.6
471,078 + ABIE41_RS02365 0.16 +0.2
471,102 + ABIE41_RS02365 0.18 -0.2
471,102 + ABIE41_RS02365 0.18 -0.3
471,103 - ABIE41_RS02365 0.18 +0.7
471,103 - ABIE41_RS02365 0.18 +0.2
471,103 - ABIE41_RS02365 0.18 -0.1
471,103 - ABIE41_RS02365 0.18 -0.1
471,103 - ABIE41_RS02365 0.18 +0.4
471,144 + ABIE41_RS02365 0.23 +0.4
471,144 + ABIE41_RS02365 0.23 +0.1
471,144 + ABIE41_RS02365 0.23 +0.9
471,144 + ABIE41_RS02365 0.23 +0.1
471,144 + ABIE41_RS02365 0.23 -0.5
471,144 + ABIE41_RS02365 0.23 -0.5
471,144 + ABIE41_RS02365 0.23 +0.8
471,145 - ABIE41_RS02365 0.23 +0.3
471,145 - ABIE41_RS02365 0.23 -1.8
471,145 - ABIE41_RS02365 0.23 -0.5
471,145 - ABIE41_RS02365 0.23 +1.1
471,145 - ABIE41_RS02365 0.23 -0.0
471,447 + ABIE41_RS02365 0.56 -0.4
471,447 + ABIE41_RS02365 0.56 -0.3
471,447 + ABIE41_RS02365 0.56 -0.2
471,447 + ABIE41_RS02365 0.56 +0.7
471,447 + ABIE41_RS02365 0.56 -0.4
471,447 + ABIE41_RS02365 0.56 +0.4
471,447 + ABIE41_RS02365 0.56 +0.4
471,447 + ABIE41_RS02365 0.56 +0.9
471,447 + ABIE41_RS02365 0.56 +2.9
471,447 + ABIE41_RS02365 0.56 +0.5
471,448 - ABIE41_RS02365 0.57 -0.9
471,448 - ABIE41_RS02365 0.57 +0.9
471,448 - ABIE41_RS02365 0.57 +0.0
471,448 - ABIE41_RS02365 0.57 -0.2
471,500 - ABIE41_RS02365 0.62 -0.3
471,500 - ABIE41_RS02365 0.62 +0.1
471,537 + ABIE41_RS02365 0.66 +0.0
471,537 + ABIE41_RS02365 0.66 -1.1
471,538 - ABIE41_RS02365 0.66 -0.9
471,538 - ABIE41_RS02365 0.66 +0.1
471,538 - ABIE41_RS02365 0.66 +1.0
471,618 + ABIE41_RS02365 0.75 +0.7
471,619 - ABIE41_RS02365 0.75 -0.3
471,619 - ABIE41_RS02365 0.75 +1.3

Or see this region's nucleotide sequence