Experiment: sn-glycero-3-phosphocholine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04769 and PFR28_04770 are separated by 88 nucleotides PFR28_04770 and PFR28_04771 are separated by 31 nucleotides PFR28_04771 and PFR28_04772 are separated by 100 nucleotides
PFR28_04769: PFR28_04769 - hypothetical protein, at 5,430,049 to 5,430,573
_04769
PFR28_04770: PFR28_04770 - CRP-like cAMP-activated global transcriptional regulator, at 5,430,662 to 5,431,348
_04770
PFR28_04771: PFR28_04771 - putative HTH-type transcriptional regulator, at 5,431,380 to 5,432,384
_04771
PFR28_04772: PFR28_04772 - hypothetical protein, at 5,432,485 to 5,433,558
_04772
Position (kb) 5431
5432
5433 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5430.380 kb on + strand, within PFR28_04769 at 5430.381 kb on - strand, within PFR28_04769 at 5430.533 kb on + strand at 5430.533 kb on + strand at 5430.533 kb on + strand at 5430.533 kb on + strand at 5430.533 kb on + strand at 5430.534 kb on - strand at 5430.534 kb on - strand at 5430.534 kb on - strand at 5430.534 kb on - strand at 5430.534 kb on - strand at 5430.534 kb on - strand at 5430.534 kb on - strand at 5430.542 kb on + strand at 5430.543 kb on - strand at 5430.543 kb on - strand at 5430.636 kb on + strand at 5430.684 kb on + strand at 5430.684 kb on + strand at 5430.685 kb on - strand at 5430.685 kb on - strand at 5430.685 kb on - strand at 5430.707 kb on + strand at 5430.707 kb on + strand at 5430.729 kb on + strand at 5430.730 kb on - strand at 5430.730 kb on - strand at 5430.737 kb on - strand, within PFR28_04770 at 5430.737 kb on - strand, within PFR28_04770 at 5430.818 kb on + strand, within PFR28_04770 at 5430.818 kb on + strand, within PFR28_04770 at 5430.819 kb on - strand, within PFR28_04770 at 5430.819 kb on - strand, within PFR28_04770 at 5431.032 kb on - strand, within PFR28_04770 at 5431.221 kb on + strand, within PFR28_04770 at 5431.222 kb on - strand, within PFR28_04770 at 5431.892 kb on - strand, within PFR28_04771 at 5431.892 kb on - strand, within PFR28_04771 at 5431.945 kb on + strand, within PFR28_04771 at 5431.945 kb on + strand, within PFR28_04771 at 5431.945 kb on + strand, within PFR28_04771 at 5431.945 kb on + strand, within PFR28_04771 at 5431.945 kb on + strand, within PFR28_04771 at 5431.945 kb on + strand, within PFR28_04771 at 5431.945 kb on + strand, within PFR28_04771 at 5431.945 kb on + strand, within PFR28_04771 at 5431.946 kb on - strand, within PFR28_04771 at 5431.946 kb on - strand, within PFR28_04771 at 5431.946 kb on - strand, within PFR28_04771 at 5431.946 kb on - strand, within PFR28_04771 at 5431.946 kb on - strand, within PFR28_04771 at 5431.946 kb on - strand, within PFR28_04771 at 5431.946 kb on - strand, within PFR28_04771 at 5431.946 kb on - strand, within PFR28_04771 at 5432.077 kb on + strand, within PFR28_04771 at 5432.209 kb on - strand, within PFR28_04771 at 5432.419 kb on + strand at 5432.428 kb on + strand at 5432.428 kb on + strand at 5432.428 kb on + strand at 5432.429 kb on - strand at 5432.429 kb on - strand at 5432.429 kb on - strand at 5432.429 kb on - strand at 5432.429 kb on - strand at 5432.479 kb on + strand at 5432.479 kb on + strand at 5432.479 kb on + strand at 5432.479 kb on + strand at 5432.479 kb on + strand at 5432.479 kb on + strand at 5432.479 kb on + strand at 5432.479 kb on + strand at 5432.479 kb on + strand at 5432.480 kb on - strand at 5432.480 kb on - strand at 5432.480 kb on - strand at 5432.480 kb on - strand at 5432.480 kb on - strand at 5432.480 kb on - strand at 5432.480 kb on - strand at 5432.480 kb on - strand at 5432.480 kb on - strand at 5432.576 kb on + strand at 5432.577 kb on - strand at 5432.577 kb on - strand at 5432.577 kb on - strand at 5432.671 kb on + strand, within PFR28_04772 at 5432.671 kb on + strand, within PFR28_04772 at 5432.672 kb on - strand, within PFR28_04772 at 5432.672 kb on - strand, within PFR28_04772 at 5432.672 kb on - strand, within PFR28_04772 at 5432.672 kb on - strand, within PFR28_04772 at 5432.672 kb on - strand, within PFR28_04772 at 5432.673 kb on + strand, within PFR28_04772 at 5432.673 kb on + strand, within PFR28_04772 at 5432.770 kb on + strand, within PFR28_04772 at 5432.771 kb on - strand, within PFR28_04772 at 5432.885 kb on + strand, within PFR28_04772 at 5433.055 kb on + strand, within PFR28_04772 at 5433.055 kb on + strand, within PFR28_04772 at 5433.055 kb on + strand, within PFR28_04772 at 5433.055 kb on + strand, within PFR28_04772 at 5433.055 kb on + strand, within PFR28_04772 at 5433.055 kb on + strand, within PFR28_04772 at 5433.056 kb on - strand, within PFR28_04772 at 5433.056 kb on - strand, within PFR28_04772 at 5433.056 kb on - strand, within PFR28_04772 at 5433.056 kb on - strand, within PFR28_04772 at 5433.091 kb on + strand, within PFR28_04772 at 5433.091 kb on + strand, within PFR28_04772 at 5433.091 kb on + strand, within PFR28_04772 at 5433.091 kb on + strand, within PFR28_04772 at 5433.091 kb on + strand, within PFR28_04772 at 5433.091 kb on + strand, within PFR28_04772 at 5433.092 kb on - strand, within PFR28_04772 at 5433.092 kb on - strand, within PFR28_04772 at 5433.092 kb on - strand, within PFR28_04772 at 5433.092 kb on - strand, within PFR28_04772 at 5433.141 kb on + strand, within PFR28_04772 at 5433.141 kb on + strand, within PFR28_04772 at 5433.142 kb on - strand, within PFR28_04772 at 5433.224 kb on + strand, within PFR28_04772 at 5433.225 kb on - strand, within PFR28_04772 at 5433.225 kb on - strand, within PFR28_04772 at 5433.225 kb on - strand, within PFR28_04772 at 5433.225 kb on - strand, within PFR28_04772 at 5433.225 kb on - strand, within PFR28_04772 at 5433.225 kb on - strand, within PFR28_04772 at 5433.225 kb on - strand, within PFR28_04772 at 5433.231 kb on + strand, within PFR28_04772 at 5433.231 kb on + strand, within PFR28_04772 at 5433.232 kb on - strand, within PFR28_04772 at 5433.269 kb on - strand, within PFR28_04772 at 5433.269 kb on - strand, within PFR28_04772 at 5433.269 kb on - strand, within PFR28_04772 at 5433.269 kb on - strand, within PFR28_04772 at 5433.272 kb on - strand, within PFR28_04772 at 5433.369 kb on + strand, within PFR28_04772 at 5433.370 kb on - strand, within PFR28_04772 at 5433.370 kb on - strand, within PFR28_04772 at 5433.370 kb on - strand, within PFR28_04772
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) remove 5,430,380 + PFR28_04769 0.63 -0.4 5,430,381 - PFR28_04769 0.63 +1.0 5,430,533 + -0.3 5,430,533 + -1.5 5,430,533 + +0.2 5,430,533 + +0.7 5,430,533 + +0.2 5,430,534 - -0.5 5,430,534 - +0.6 5,430,534 - -1.3 5,430,534 - -0.3 5,430,534 - +1.6 5,430,534 - -1.4 5,430,534 - -1.1 5,430,542 + -0.2 5,430,543 - +1.3 5,430,543 - +2.3 5,430,636 + -3.0 5,430,684 + -0.4 5,430,684 + -0.0 5,430,685 - -4.0 5,430,685 - +0.4 5,430,685 - -3.2 5,430,707 + -1.6 5,430,707 + +2.7 5,430,729 + -1.1 5,430,730 - +0.8 5,430,730 - +1.5 5,430,737 - PFR28_04770 0.11 -0.1 5,430,737 - PFR28_04770 0.11 +1.2 5,430,818 + PFR28_04770 0.23 +0.9 5,430,818 + PFR28_04770 0.23 +0.5 5,430,819 - PFR28_04770 0.23 +0.0 5,430,819 - PFR28_04770 0.23 +0.5 5,431,032 - PFR28_04770 0.54 +0.1 5,431,221 + PFR28_04770 0.81 +0.8 5,431,222 - PFR28_04770 0.82 -0.6 5,431,892 - PFR28_04771 0.51 +0.4 5,431,892 - PFR28_04771 0.51 +0.2 5,431,945 + PFR28_04771 0.56 +0.9 5,431,945 + PFR28_04771 0.56 +0.5 5,431,945 + PFR28_04771 0.56 -0.7 5,431,945 + PFR28_04771 0.56 -1.2 5,431,945 + PFR28_04771 0.56 +0.7 5,431,945 + PFR28_04771 0.56 +0.8 5,431,945 + PFR28_04771 0.56 +0.7 5,431,945 + PFR28_04771 0.56 -0.6 5,431,946 - PFR28_04771 0.56 -1.0 5,431,946 - PFR28_04771 0.56 -0.2 5,431,946 - PFR28_04771 0.56 +0.3 5,431,946 - PFR28_04771 0.56 +0.5 5,431,946 - PFR28_04771 0.56 -0.3 5,431,946 - PFR28_04771 0.56 -0.6 5,431,946 - PFR28_04771 0.56 +0.3 5,431,946 - PFR28_04771 0.56 -1.8 5,432,077 + PFR28_04771 0.69 +0.5 5,432,209 - PFR28_04771 0.82 -0.3 5,432,419 + +0.2 5,432,428 + -2.2 5,432,428 + +0.4 5,432,428 + +1.1 5,432,429 - -0.4 5,432,429 - -2.3 5,432,429 - +0.3 5,432,429 - +0.5 5,432,429 - +0.1 5,432,479 + +0.4 5,432,479 + +0.7 5,432,479 + +2.5 5,432,479 + -0.3 5,432,479 + +1.3 5,432,479 + +0.2 5,432,479 + -1.6 5,432,479 + -2.6 5,432,479 + +0.3 5,432,480 - -0.3 5,432,480 - +1.2 5,432,480 - +0.5 5,432,480 - +0.7 5,432,480 - -3.4 5,432,480 - -0.5 5,432,480 - +1.0 5,432,480 - -0.3 5,432,480 - -0.3 5,432,576 + -0.0 5,432,577 - -0.6 5,432,577 - +0.0 5,432,577 - +1.0 5,432,671 + PFR28_04772 0.17 +0.0 5,432,671 + PFR28_04772 0.17 +2.5 5,432,672 - PFR28_04772 0.17 -0.7 5,432,672 - PFR28_04772 0.17 -1.1 5,432,672 - PFR28_04772 0.17 +0.7 5,432,672 - PFR28_04772 0.17 -0.8 5,432,672 - PFR28_04772 0.17 -0.4 5,432,673 + PFR28_04772 0.18 +0.5 5,432,673 + PFR28_04772 0.18 -2.4 5,432,770 + PFR28_04772 0.27 +1.1 5,432,771 - PFR28_04772 0.27 -2.6 5,432,885 + PFR28_04772 0.37 -0.0 5,433,055 + PFR28_04772 0.53 +0.2 5,433,055 + PFR28_04772 0.53 +0.5 5,433,055 + PFR28_04772 0.53 -3.0 5,433,055 + PFR28_04772 0.53 -1.9 5,433,055 + PFR28_04772 0.53 -0.2 5,433,055 + PFR28_04772 0.53 -0.8 5,433,056 - PFR28_04772 0.53 -0.6 5,433,056 - PFR28_04772 0.53 -2.1 5,433,056 - PFR28_04772 0.53 +0.8 5,433,056 - PFR28_04772 0.53 +0.1 5,433,091 + PFR28_04772 0.56 -2.3 5,433,091 + PFR28_04772 0.56 -3.8 5,433,091 + PFR28_04772 0.56 -0.8 5,433,091 + PFR28_04772 0.56 +0.0 5,433,091 + PFR28_04772 0.56 +0.5 5,433,091 + PFR28_04772 0.56 +0.1 5,433,092 - PFR28_04772 0.57 +0.2 5,433,092 - PFR28_04772 0.57 -2.5 5,433,092 - PFR28_04772 0.57 -1.2 5,433,092 - PFR28_04772 0.57 +1.2 5,433,141 + PFR28_04772 0.61 -1.1 5,433,141 + PFR28_04772 0.61 -1.1 5,433,142 - PFR28_04772 0.61 -0.2 5,433,224 + PFR28_04772 0.69 +1.4 5,433,225 - PFR28_04772 0.69 -2.0 5,433,225 - PFR28_04772 0.69 -1.6 5,433,225 - PFR28_04772 0.69 -0.3 5,433,225 - PFR28_04772 0.69 -0.9 5,433,225 - PFR28_04772 0.69 +0.2 5,433,225 - PFR28_04772 0.69 -0.5 5,433,225 - PFR28_04772 0.69 -1.0 5,433,231 + PFR28_04772 0.69 -2.3 5,433,231 + PFR28_04772 0.69 +2.0 5,433,232 - PFR28_04772 0.70 -1.0 5,433,269 - PFR28_04772 0.73 +0.8 5,433,269 - PFR28_04772 0.73 -1.9 5,433,269 - PFR28_04772 0.73 -1.6 5,433,269 - PFR28_04772 0.73 -1.3 5,433,272 - PFR28_04772 0.73 -1.9 5,433,369 + PFR28_04772 0.82 +0.1 5,433,370 - PFR28_04772 0.82 -1.6 5,433,370 - PFR28_04772 0.82 -0.3 5,433,370 - PFR28_04772 0.82 -0.1
Or see this region's nucleotide sequence