Strain Fitness in Pseudomonas sp. RS175 around PFR28_04767

Experiment: sn-glycero-3-phosphocholine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04766 and PFR28_04767 overlap by 4 nucleotidesPFR28_04767 and PFR28_04768 overlap by 4 nucleotides PFR28_04766: PFR28_04766 - hypothetical protein, at 5,425,804 to 5,427,168 _04766 PFR28_04767: PFR28_04767 - hypothetical protein, at 5,427,165 to 5,427,689 _04767 PFR28_04768: PFR28_04768 - Fructose dehydrogenase large subunit, at 5,427,686 to 5,429,905 _04768 Position (kb) 5427 5428Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5426.272 kb on + strand, within PFR28_04766at 5426.272 kb on + strand, within PFR28_04766at 5426.273 kb on - strand, within PFR28_04766at 5426.273 kb on - strand, within PFR28_04766at 5426.275 kb on - strand, within PFR28_04766at 5426.275 kb on - strand, within PFR28_04766at 5426.275 kb on - strand, within PFR28_04766at 5426.335 kb on + strand, within PFR28_04766at 5426.335 kb on + strand, within PFR28_04766at 5426.335 kb on + strand, within PFR28_04766at 5426.336 kb on - strand, within PFR28_04766at 5426.336 kb on - strand, within PFR28_04766at 5426.336 kb on - strand, within PFR28_04766at 5426.336 kb on - strand, within PFR28_04766at 5426.510 kb on - strand, within PFR28_04766at 5426.510 kb on - strand, within PFR28_04766at 5426.711 kb on - strand, within PFR28_04766at 5426.711 kb on - strand, within PFR28_04766at 5426.711 kb on - strand, within PFR28_04766at 5426.730 kb on + strand, within PFR28_04766at 5426.731 kb on - strand, within PFR28_04766at 5426.731 kb on - strand, within PFR28_04766at 5426.842 kb on + strand, within PFR28_04766at 5426.842 kb on + strand, within PFR28_04766at 5426.843 kb on - strand, within PFR28_04766at 5426.891 kb on - strand, within PFR28_04766at 5426.891 kb on - strand, within PFR28_04766at 5426.891 kb on - strand, within PFR28_04766at 5426.922 kb on + strand, within PFR28_04766at 5426.923 kb on - strand, within PFR28_04766at 5426.923 kb on - strand, within PFR28_04766at 5427.010 kb on + strand, within PFR28_04766at 5427.010 kb on + strand, within PFR28_04766at 5427.010 kb on + strand, within PFR28_04766at 5427.010 kb on + strand, within PFR28_04766at 5427.011 kb on - strand, within PFR28_04766at 5427.011 kb on - strand, within PFR28_04766at 5427.011 kb on - strand, within PFR28_04766at 5427.118 kb on + strandat 5427.118 kb on + strandat 5427.118 kb on + strandat 5427.118 kb on + strandat 5427.119 kb on - strandat 5427.119 kb on - strandat 5427.279 kb on + strand, within PFR28_04767at 5427.279 kb on + strand, within PFR28_04767at 5427.280 kb on - strand, within PFR28_04767at 5427.280 kb on - strand, within PFR28_04767at 5427.330 kb on + strand, within PFR28_04767at 5427.331 kb on - strand, within PFR28_04767at 5427.469 kb on - strand, within PFR28_04767at 5427.477 kb on + strand, within PFR28_04767at 5427.477 kb on + strand, within PFR28_04767at 5427.478 kb on - strand, within PFR28_04767at 5427.478 kb on - strand, within PFR28_04767at 5427.488 kb on + strand, within PFR28_04767at 5427.492 kb on + strand, within PFR28_04767at 5427.492 kb on + strand, within PFR28_04767at 5427.531 kb on + strand, within PFR28_04767at 5427.531 kb on + strand, within PFR28_04767at 5427.531 kb on + strand, within PFR28_04767at 5427.531 kb on + strand, within PFR28_04767at 5427.531 kb on + strand, within PFR28_04767at 5427.531 kb on + strand, within PFR28_04767at 5427.531 kb on + strand, within PFR28_04767at 5427.531 kb on + strand, within PFR28_04767at 5427.531 kb on + strand, within PFR28_04767at 5427.532 kb on - strand, within PFR28_04767at 5427.532 kb on - strand, within PFR28_04767at 5427.532 kb on - strand, within PFR28_04767at 5427.532 kb on - strand, within PFR28_04767at 5427.532 kb on - strand, within PFR28_04767at 5427.532 kb on - strand, within PFR28_04767at 5427.532 kb on - strand, within PFR28_04767at 5427.537 kb on + strand, within PFR28_04767at 5427.537 kb on + strand, within PFR28_04767at 5427.538 kb on - strand, within PFR28_04767at 5427.538 kb on - strand, within PFR28_04767at 5427.538 kb on - strand, within PFR28_04767at 5427.538 kb on - strand, within PFR28_04767at 5427.538 kb on - strand, within PFR28_04767at 5427.538 kb on - strand, within PFR28_04767at 5427.538 kb on - strand, within PFR28_04767at 5427.538 kb on - strand, within PFR28_04767at 5427.538 kb on - strand, within PFR28_04767at 5427.538 kb on - strand, within PFR28_04767at 5427.538 kb on - strand, within PFR28_04767at 5427.538 kb on - strand, within PFR28_04767at 5427.538 kb on - strand, within PFR28_04767at 5427.579 kb on + strand, within PFR28_04767at 5427.691 kb on + strandat 5427.691 kb on + strandat 5427.692 kb on - strandat 5427.692 kb on - strandat 5427.709 kb on - strandat 5427.709 kb on - strandat 5427.739 kb on + strandat 5427.750 kb on - strandat 5427.750 kb on - strandat 5427.824 kb on + strandat 5427.824 kb on + strandat 5427.825 kb on - strandat 5427.839 kb on + strandat 5427.839 kb on + strandat 5427.981 kb on - strand, within PFR28_04768at 5428.019 kb on + strand, within PFR28_04768at 5428.019 kb on + strand, within PFR28_04768at 5428.019 kb on + strand, within PFR28_04768at 5428.019 kb on + strand, within PFR28_04768at 5428.019 kb on + strand, within PFR28_04768at 5428.020 kb on - strand, within PFR28_04768at 5428.020 kb on - strand, within PFR28_04768at 5428.020 kb on - strand, within PFR28_04768at 5428.020 kb on - strand, within PFR28_04768at 5428.020 kb on - strand, within PFR28_04768at 5428.105 kb on - strand, within PFR28_04768at 5428.106 kb on + strand, within PFR28_04768at 5428.106 kb on + strand, within PFR28_04768at 5428.107 kb on - strand, within PFR28_04768at 5428.107 kb on - strand, within PFR28_04768at 5428.136 kb on + strand, within PFR28_04768at 5428.212 kb on - strand, within PFR28_04768at 5428.212 kb on - strand, within PFR28_04768at 5428.370 kb on + strand, within PFR28_04768at 5428.399 kb on + strand, within PFR28_04768at 5428.399 kb on + strand, within PFR28_04768at 5428.399 kb on + strand, within PFR28_04768at 5428.400 kb on - strand, within PFR28_04768at 5428.436 kb on + strand, within PFR28_04768at 5428.436 kb on + strand, within PFR28_04768at 5428.437 kb on - strand, within PFR28_04768at 5428.437 kb on - strand, within PFR28_04768at 5428.493 kb on + strand, within PFR28_04768at 5428.493 kb on + strand, within PFR28_04768at 5428.493 kb on + strand, within PFR28_04768at 5428.494 kb on - strand, within PFR28_04768at 5428.494 kb on - strand, within PFR28_04768at 5428.494 kb on - strand, within PFR28_04768at 5428.521 kb on + strand, within PFR28_04768at 5428.521 kb on + strand, within PFR28_04768at 5428.521 kb on + strand, within PFR28_04768at 5428.522 kb on - strand, within PFR28_04768at 5428.522 kb on - strand, within PFR28_04768at 5428.522 kb on - strand, within PFR28_04768at 5428.562 kb on + strand, within PFR28_04768at 5428.562 kb on + strand, within PFR28_04768at 5428.562 kb on + strand, within PFR28_04768at 5428.562 kb on + strand, within PFR28_04768at 5428.563 kb on - strand, within PFR28_04768at 5428.563 kb on - strand, within PFR28_04768at 5428.616 kb on + strand, within PFR28_04768at 5428.616 kb on + strand, within PFR28_04768at 5428.616 kb on + strand, within PFR28_04768at 5428.616 kb on + strand, within PFR28_04768at 5428.616 kb on + strand, within PFR28_04768at 5428.616 kb on + strand, within PFR28_04768at 5428.617 kb on - strand, within PFR28_04768at 5428.617 kb on - strand, within PFR28_04768at 5428.617 kb on - strand, within PFR28_04768at 5428.617 kb on - strand, within PFR28_04768at 5428.617 kb on - strand, within PFR28_04768at 5428.617 kb on - strand, within PFR28_04768at 5428.617 kb on - strand, within PFR28_04768at 5428.653 kb on + strand, within PFR28_04768at 5428.653 kb on + strand, within PFR28_04768at 5428.653 kb on + strand, within PFR28_04768at 5428.653 kb on + strand, within PFR28_04768at 5428.653 kb on + strand, within PFR28_04768at 5428.653 kb on + strand, within PFR28_04768at 5428.653 kb on + strand, within PFR28_04768at 5428.654 kb on - strand, within PFR28_04768at 5428.654 kb on - strand, within PFR28_04768

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Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C)
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5,426,272 + PFR28_04766 0.34 +0.7
5,426,272 + PFR28_04766 0.34 -4.1
5,426,273 - PFR28_04766 0.34 -1.5
5,426,273 - PFR28_04766 0.34 -3.3
5,426,275 - PFR28_04766 0.35 -0.5
5,426,275 - PFR28_04766 0.35 -2.5
5,426,275 - PFR28_04766 0.35 -0.3
5,426,335 + PFR28_04766 0.39 +0.4
5,426,335 + PFR28_04766 0.39 +0.7
5,426,335 + PFR28_04766 0.39 +1.0
5,426,336 - PFR28_04766 0.39 +0.7
5,426,336 - PFR28_04766 0.39 +0.2
5,426,336 - PFR28_04766 0.39 +0.6
5,426,336 - PFR28_04766 0.39 -0.3
5,426,510 - PFR28_04766 0.52 -0.2
5,426,510 - PFR28_04766 0.52 -2.8
5,426,711 - PFR28_04766 0.66 -0.2
5,426,711 - PFR28_04766 0.66 +0.7
5,426,711 - PFR28_04766 0.66 +1.0
5,426,730 + PFR28_04766 0.68 -0.0
5,426,731 - PFR28_04766 0.68 +0.8
5,426,731 - PFR28_04766 0.68 +0.3
5,426,842 + PFR28_04766 0.76 -3.4
5,426,842 + PFR28_04766 0.76 -0.2
5,426,843 - PFR28_04766 0.76 -4.2
5,426,891 - PFR28_04766 0.80 +0.1
5,426,891 - PFR28_04766 0.80 +1.7
5,426,891 - PFR28_04766 0.80 -1.9
5,426,922 + PFR28_04766 0.82 +1.4
5,426,923 - PFR28_04766 0.82 -0.4
5,426,923 - PFR28_04766 0.82 -0.0
5,427,010 + PFR28_04766 0.88 +1.9
5,427,010 + PFR28_04766 0.88 +0.6
5,427,010 + PFR28_04766 0.88 +0.1
5,427,010 + PFR28_04766 0.88 +0.1
5,427,011 - PFR28_04766 0.88 +1.1
5,427,011 - PFR28_04766 0.88 -1.9
5,427,011 - PFR28_04766 0.88 -0.9
5,427,118 + -0.2
5,427,118 + -0.9
5,427,118 + -2.8
5,427,118 + +0.5
5,427,119 - -0.6
5,427,119 - +0.8
5,427,279 + PFR28_04767 0.22 +0.3
5,427,279 + PFR28_04767 0.22 -2.4
5,427,280 - PFR28_04767 0.22 +0.5
5,427,280 - PFR28_04767 0.22 -0.1
5,427,330 + PFR28_04767 0.31 -2.2
5,427,331 - PFR28_04767 0.32 -1.1
5,427,469 - PFR28_04767 0.58 -2.8
5,427,477 + PFR28_04767 0.59 -3.3
5,427,477 + PFR28_04767 0.59 -1.9
5,427,478 - PFR28_04767 0.60 -0.5
5,427,478 - PFR28_04767 0.60 -0.3
5,427,488 + PFR28_04767 0.62 +0.8
5,427,492 + PFR28_04767 0.62 +2.1
5,427,492 + PFR28_04767 0.62 -0.9
5,427,531 + PFR28_04767 0.70 +1.1
5,427,531 + PFR28_04767 0.70 -2.2
5,427,531 + PFR28_04767 0.70 +0.1
5,427,531 + PFR28_04767 0.70 -1.8
5,427,531 + PFR28_04767 0.70 -1.6
5,427,531 + PFR28_04767 0.70 -1.7
5,427,531 + PFR28_04767 0.70 +0.9
5,427,531 + PFR28_04767 0.70 +1.6
5,427,531 + PFR28_04767 0.70 +0.2
5,427,532 - PFR28_04767 0.70 -0.6
5,427,532 - PFR28_04767 0.70 -0.5
5,427,532 - PFR28_04767 0.70 +0.9
5,427,532 - PFR28_04767 0.70 +1.9
5,427,532 - PFR28_04767 0.70 -1.5
5,427,532 - PFR28_04767 0.70 -0.3
5,427,532 - PFR28_04767 0.70 -2.6
5,427,537 + PFR28_04767 0.71 +0.2
5,427,537 + PFR28_04767 0.71 +0.1
5,427,538 - PFR28_04767 0.71 -0.7
5,427,538 - PFR28_04767 0.71 -0.8
5,427,538 - PFR28_04767 0.71 +1.8
5,427,538 - PFR28_04767 0.71 -1.5
5,427,538 - PFR28_04767 0.71 -2.0
5,427,538 - PFR28_04767 0.71 +1.4
5,427,538 - PFR28_04767 0.71 +0.5
5,427,538 - PFR28_04767 0.71 +0.5
5,427,538 - PFR28_04767 0.71 +0.3
5,427,538 - PFR28_04767 0.71 -3.5
5,427,538 - PFR28_04767 0.71 +0.0
5,427,538 - PFR28_04767 0.71 +1.2
5,427,538 - PFR28_04767 0.71 -1.8
5,427,579 + PFR28_04767 0.79 -1.1
5,427,691 + -1.7
5,427,691 + +0.0
5,427,692 - +0.5
5,427,692 - +0.4
5,427,709 - -1.3
5,427,709 - +1.1
5,427,739 + -0.9
5,427,750 - -0.4
5,427,750 - +0.2
5,427,824 + +1.3
5,427,824 + +1.5
5,427,825 - -1.5
5,427,839 + +0.5
5,427,839 + -2.0
5,427,981 - PFR28_04768 0.13 +0.3
5,428,019 + PFR28_04768 0.15 -0.0
5,428,019 + PFR28_04768 0.15 +0.8
5,428,019 + PFR28_04768 0.15 -1.0
5,428,019 + PFR28_04768 0.15 +0.8
5,428,019 + PFR28_04768 0.15 +1.7
5,428,020 - PFR28_04768 0.15 +0.1
5,428,020 - PFR28_04768 0.15 -0.2
5,428,020 - PFR28_04768 0.15 +0.5
5,428,020 - PFR28_04768 0.15 +0.9
5,428,020 - PFR28_04768 0.15 -0.6
5,428,105 - PFR28_04768 0.19 -0.8
5,428,106 + PFR28_04768 0.19 -3.4
5,428,106 + PFR28_04768 0.19 -0.2
5,428,107 - PFR28_04768 0.19 +0.5
5,428,107 - PFR28_04768 0.19 +0.7
5,428,136 + PFR28_04768 0.20 +0.8
5,428,212 - PFR28_04768 0.24 -0.1
5,428,212 - PFR28_04768 0.24 -0.1
5,428,370 + PFR28_04768 0.31 -2.0
5,428,399 + PFR28_04768 0.32 -0.1
5,428,399 + PFR28_04768 0.32 +0.6
5,428,399 + PFR28_04768 0.32 +1.2
5,428,400 - PFR28_04768 0.32 +1.2
5,428,436 + PFR28_04768 0.34 -0.8
5,428,436 + PFR28_04768 0.34 -0.3
5,428,437 - PFR28_04768 0.34 -0.4
5,428,437 - PFR28_04768 0.34 +1.3
5,428,493 + PFR28_04768 0.36 -0.3
5,428,493 + PFR28_04768 0.36 -2.6
5,428,493 + PFR28_04768 0.36 -0.6
5,428,494 - PFR28_04768 0.36 +1.9
5,428,494 - PFR28_04768 0.36 +0.7
5,428,494 - PFR28_04768 0.36 -1.5
5,428,521 + PFR28_04768 0.38 +0.3
5,428,521 + PFR28_04768 0.38 -0.6
5,428,521 + PFR28_04768 0.38 -3.4
5,428,522 - PFR28_04768 0.38 +1.2
5,428,522 - PFR28_04768 0.38 -3.2
5,428,522 - PFR28_04768 0.38 -0.4
5,428,562 + PFR28_04768 0.39 -0.6
5,428,562 + PFR28_04768 0.39 -0.1
5,428,562 + PFR28_04768 0.39 -0.4
5,428,562 + PFR28_04768 0.39 -2.8
5,428,563 - PFR28_04768 0.40 +0.6
5,428,563 - PFR28_04768 0.40 +0.6
5,428,616 + PFR28_04768 0.42 +0.6
5,428,616 + PFR28_04768 0.42 +0.4
5,428,616 + PFR28_04768 0.42 +0.5
5,428,616 + PFR28_04768 0.42 +1.2
5,428,616 + PFR28_04768 0.42 +0.3
5,428,616 + PFR28_04768 0.42 +0.3
5,428,617 - PFR28_04768 0.42 -0.4
5,428,617 - PFR28_04768 0.42 -2.0
5,428,617 - PFR28_04768 0.42 +2.0
5,428,617 - PFR28_04768 0.42 -1.7
5,428,617 - PFR28_04768 0.42 -2.2
5,428,617 - PFR28_04768 0.42 -2.4
5,428,617 - PFR28_04768 0.42 +0.0
5,428,653 + PFR28_04768 0.44 +0.1
5,428,653 + PFR28_04768 0.44 +0.1
5,428,653 + PFR28_04768 0.44 +0.6
5,428,653 + PFR28_04768 0.44 +0.1
5,428,653 + PFR28_04768 0.44 -0.6
5,428,653 + PFR28_04768 0.44 +1.9
5,428,653 + PFR28_04768 0.44 -4.2
5,428,654 - PFR28_04768 0.44 +0.8
5,428,654 - PFR28_04768 0.44 +1.8

Or see this region's nucleotide sequence